Stem-loop vvi-MIR167a

Accession

MI0006515

Description

Vitis vinifera vvi-MIR167a precursor miRNA

Literature search

8 open access papers mention vvi-MIR167a
(16 sentences)

Sequence

972212 reads, 65190 reads per million, 2 experiments

uuugagagguUGAAGCUGCCAGCAUGAUCUGgugaaacaaacaccaucucuuucuucucuaaccccaugucuggauucguccaccgauccauuauuauagaccaggccgcccguuucccauguagugaucgauaauuaggcucgggguuuucacuuuuuagugggaucuaauccuuaggauggauguuuguaugggugguauauaucauggugaggucuguuuucuauuuuaauucuaacgggguuuugauuuagcugaggggguauaauucauagccuaauuccaaaaccuaacuccauagagauaggguuccaugaucaggucaucuugcagcuucaaucacucacuca
..((((.((((((((((((.((.((((((((((...(((((((((((((...........((((((..(((((((....)))..(((((.(((((....((...((....))...))....))))))))))......))))..))))))..((((....))))((((...))))...)))))).)))))))...............(((((..((.(((((((.((((.............(((((((((.(((((((.(((.......))).))).)))).).))))))))......))))))))))).))))))))))))))))))).)))))))))))).))))....

Structure

--uu    a            C  C          gaaacaaacaccaucucuuucuucucuaaccccaugucuggauucguccaccgauccauuauuauagaccaggccgcccguuucccauguagugaucgauaauuaggcucgggguuuucacuuuuuagugggaucuaauccuuaggauggauguuuguaugggugguauauau     ug  g       u    uuuaauucuaacg        - u    -   a   gg 
    ugag gguUGAAGCUGC AG AUGAUCUGgu                                                                                                                                                                             caugg  ag ucuguuu cuau             ggguuuug a uuag cug ggg  u
    |||| |||||||||||| || ||||||||||                                                                                                                                                                             |||||  || ||||||| ||||             |||||||| | |||| ||| |||  a
    acuc cuaacuucgacg uc uacuggacua                                                                                                                                                                             guacc  uu ggauaga gaua             uccaaaac u aauc gau cuu  u
acuc    a            u  -          -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------     --  g       -    -------ccucaa        c u    c   a   aa 

Annotation confidence Not enough data

Genome context

chr1: 1618504-1618854 [+]

Mature vvi-miR167a

• Accession: MIMAT0005670
• Description: Vitis vinifera vvi-miR167a mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUG - 31
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558