Stem-loop vvi-MIR156i

Accession

MI0006492

Description

Vitis vinifera vvi-MIR156i precursor miRNA

Literature search

12 open access papers mention vvi-MIR156i
(93 sentences)

Sequence

10630032 reads, 12134.0 reads per million, 224 experiments

ggugacguugUUGACAGAAGAUAGAGAGCACagaugaugaaaugcaaggagccagcaucucacuccuuuguGCUCUCUAUUCUUCUGUCAUCaccuuaaggcc
(((((......(((((((((((((((((((((((.(((((.((((.........)))).))).)).))))))))))))).)))))))))))))))........

Structure

--------     cguugU          -             u  -   a    aag 
        gguga      UGACAGAAGA UAGAGAGCACaga ga uga augc   g
        |||||      |||||||||| ||||||||||||| || ||| ||||   a
        ccaCU      ACUGUCUUCU AUCUCUCGuguuu cu acu uacg   g
ccggaauu     ------          U             c  c   c    acc 

Annotation confidence High

Genome context

gb|CP126661.1|: 19665189-19665291 [-]

Mature vvi-miR156i-5p

• Accession: MIMAT0005647
• Description: Vitis vinifera vvi-miR156i-5p mature miRNA
• Sequence: 11 - UUGACAGAAGAUAGAGAGCAC - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR156i-3p

• Accession: MIMAT0055784
• Description: Vitis vinifera vvi-miR156i-3p mature miRNA
• Sequence: 72 - GCUCUCUAUUCUUCUGUCAUC - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558