Stem-loop vvi-MIR535c

Accession

MI0006583

Description

Vitis vinifera vvi-MIR535c precursor miRNA

Literature search

3 open access papers mention vvi-MIR535c
(12 sentences)

Sequence

1706753 reads, 114435 reads per million, 2 experiments

uguaauugcuUGACAACGAGAGAGAGCACGCuagucugcauucaugcgaggaacaugacuguguacaggcgugcucucugucgcugucauacaaucuucuc
....((((..(((((.(((.((((((((((((.((.((((.(((((.......))))).)))).)).)))))))))))).))).)))))..))))......

Structure

--ugua    cu     A   G            a  c    u     cg 
      auug  UGACA CGA AGAGAGCACGCu gu ugca ucaug  a
      ||||  ||||| ||| |||||||||||| || |||| |||||  g
      uaac  acugu gcu ucucucgugcgg ca gugu aguac  g
cucuuc    au     c   g            a  u    c     aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature vvi-miR535c

• Accession: MIMAT0005738
• Description: Vitis vinifera vvi-miR535c mature miRNA
• Sequence: 11 - UGACAACGAGAGAGAGCACGC - 31
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558