Stem-loop vvi-MIR169w

Accession

MI0007948

Description

Vitis vinifera vvi-MIR169w precursor miRNA

Literature search

8 open access papers mention vvi-MIR169w
(20 sentences)

Sequence

131237 reads, 680.0 reads per million, 162 experiments

gguuauguggugCAGCCAAGGAUGACUUGCCGGcaacucccuuuauuguacucaugcaugcucauacuuauacuguugugggcaucauuuaaguggcaaaaaugguggucGGCGAGUCAUUCUUAGCUACAuuucugccucau
(((...(.((((.(((.(((((((((((((((((....((.(((.(((((((.(((.((((((((((.......).))))))))))))...))).))))))).))..))))))))))))))))).))).)))).).)))....

Structure

----   uau u    C   C                 aacu  c   a    -   --c   c         - uu 
    ggu   g ggug AGC AAGGAUGACUUGCCGGc    cc uuu uugu acu   aug augcucaua c  a
    |||   | |||| ||| |||||||||||||||||    || ||| |||| |||   ||| ||||||||| |  u
    ccg   c uuAC UCG UUCUUACUGAGCGGcug    gg aaa aacg uga   uac uacgggugu g  a
uacu   --u u    A   A                 --gu  u   -    g   auu   -         u uc 

Annotation confidence High

Genome context

gb|CP126661.1|: 29892898-29893040 [+]

Mature vvi-miR169w-5p

• Accession: MIMAT0006553
• Description: Vitis vinifera vvi-miR169w-5p mature miRNA
• Sequence: 13 - CAGCCAAGGAUGACUUGCCGG - 33
• Evidence: experimental ; Array [2]

Mature vvi-miR169w-3p

• Accession: MIMAT0055874
• Description: Vitis vinifera vvi-miR169w-3p mature miRNA
• Sequence: 111 - GGCGAGUCAUUCUUAGCUACA - 131
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558