Stem-loop vvi-MIR169m

Accession

MI0006530

Description

Vitis vinifera vvi-MIR169m precursor miRNA

Literature search

8 open access papers mention vvi-MIR169m
(16 sentences)

Sequence

26259 reads, 158.0 reads per million, 181 experiments

agaguggaaguGAGCCAAGGAUGACUUGCCGGcagcugcagcaaggcauuaagguuuaacuggccauaacugGCAAGCAUCCGAGGCUCUGUuucacccucu
((.((((((..(((((..(((((.((((((((......(((..((((......))))..))).......)))))))))))))..)))))..)))))).))..

Structure

--  a      gu     AA     A        -cagcug   ca    au 
  ag guggaa  GAGCC  GGAUG CUUGCCGG       cag  aggc  u
  || ||||||  |||||  ||||| ||||||||       |||  ||||   
  uc cacuuU  CUCGG  CCUAC GAACGguc       guc  uuug  a
uc  c      GU     AG     -        aauaccg   aa    ga 

Annotation confidence High

Genome context

gb|CP126658.1|: 16611562-16611663 [+]

Mature vvi-miR169m-5p

• Accession: MIMAT0005685
• Description: Vitis vinifera vvi-miR169m-5p mature miRNA
• Sequence: 12 - GAGCCAAGGAUGACUUGCCGG - 32
• Evidence: experimental ; Array [2]

Mature vvi-miR169m-3p

• Accession: MIMAT0055814
• Description: Vitis vinifera vvi-miR169m-3p mature miRNA
• Sequence: 73 - GCAAGCAUCCGAGGCUCUGU - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558