Stem-loop vvi-MIR171d

Accession

MI0006539

Description

Vitis vinifera vvi-MIR171d precursor miRNA

Literature search

4 open access papers mention vvi-MIR171d
(14 sentences)

Sequence

2356465 reads, 6333.0 reads per million, 215 experiments

uagauacacgAGAUAUUGAUACGGUUCAAUUagaaagcuguguucuaaguuaagaacucuguuguuUGAUUGAGCCGUGCCAAUAUCacguccuacuucu
.......(((.(((((((.(((((((((((((((.(((.(.(((((......))))).).))).))))))))))))))).))))))).))).........

Structure

--uagauac   A       A               a   u u     aa 
         acg GAUAUUG UACGGUUCAAUUaga agc g guucu  g
         ||| ||||||| ||||||||||||||| ||| | |||||   
         ugc CUAUAAC GUGCCGAGUUAGUuu uug c caaga  u
ucuucaucc   a       C               g   u u     au 

Annotation confidence Medium

Genome context

gb|CP126659.1|: 5529380-5529466 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR171d

Mature vvi-miR171d-5p

• Accession: MIMAT0055823
• Description: Vitis vinifera vvi-miR171d-5p mature miRNA
• Sequence: 11 - AGAUAUUGAUACGGUUCAAUU - 31
• Evidence: experimental ; unknown

Mature vvi-miR171d-3p

• Accession: MIMAT0005694
• Description: Vitis vinifera vvi-miR171d-3p mature miRNA
• Sequence: 67 - UGAUUGAGCCGUGCCAAUAUC - 87
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558