Stem-loop vvi-MIR845d

Accession

MI0007977

Description

Vitis vinifera vvi-MIR845d precursor miRNA

Literature search

4 open access papers mention vvi-MIR845d
(7 sentences)

Sequence

auaaccaacauuaauuaucccuagggccaugggauaaacaaaaacucugcaaaaccaaguuagcacacccuagaaugguucuagcacaauuacuaaccuaUGGCUCUGAUACCAAUUGAUGggaaaaaccu
........((((((((.....((((((((((((..............(((..(((((..((((......))))..)))))...)))..........)))))))))))).....))))))))..........

Structure

--auaaccaa        auccc            auaaacaaaaacuc   -aa     ag    ca 
          cauuaauu     uagggccauggg              ugc   aacca  uuag  c
          ||||||||     ||||||||||||              |||   |||||  ||||   
          GUAGUUAA     GUCUCGGUaucc              acg   uuggu  gauc  a
uccaaaaagg        CCAUA            ----aaucauuaac   auc     aa    cc 

Annotation confidence Not enough data

Genome context

chr4: 9870404-9870534 [-]

Mature vvi-miR845d

• Accession: MIMAT0006582
• Description: Vitis vinifera vvi-miR845d mature miRNA
• Sequence: 101 - UGGCUCUGAUACCAAUUGAUG - 121
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467