Stem-loop vvi-MIR845d

Accession

MI0007977

Description

Vitis vinifera vvi-MIR845d precursor miRNA

Literature search

4 open access papers mention vvi-MIR845d
(7 sentences)

Sequence

1129 reads, 11.0 reads per million, 152 experiments

auaaccaacauuaauuaucccuAGGGCCAUGGGAUAAACAAAAACucugcaaaaccaaguuagcacacccuagaaugguucuagcacaauuacuaaccuaUGGCUCUGAUACCAAUUGAUGggaaaaaccu
........((((((((.....((((((((((((..............(((..(((((..((((......))))..)))))...)))..........)))))))))))).....))))))))..........

Structure

--auaaccaa        auccc            AUAAACAAAAACuc   -aa     ag    ca 
          cauuaauu     uAGGGCCAUGGG              ugc   aacca  uuag  c
          ||||||||     ||||||||||||              |||   |||||  ||||   
          GUAGUUAA     GUCUCGGUaucc              acg   uuggu  gauc  a
uccaaaaagg        CCAUA            ----aaucauuaac   auc     aa    cc 

Annotation confidence Low

Genome context

gb|CP126651.1|: 9870916-9871046 [-]

Mature vvi-miR845d-5p

• Accession: MIMAT0055898
• Description: Vitis vinifera vvi-miR845d-5p mature miRNA
• Sequence: 23 - AGGGCCAUGGGAUAAACAAAAAC - 45
• Evidence: experimental ; unknown

Mature vvi-miR845d-3p

• Accession: MIMAT0006582
• Description: Vitis vinifera vvi-miR845d-3p mature miRNA
• Sequence: 101 - UGGCUCUGAUACCAAUUGAUG - 121
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467