Stem-loop vvi-MIR477b

Accession

MI0016025

Description

Vitis vinifera vvi-MIR477b precursor miRNA

Literature search

2 open access papers mention vvi-MIR477b
(2 sentences)

Sequence

61 reads, 4 reads per million, 2 experiments

gccaacacgaggcauuucuauugcucACUCUUUCUCAAGGGCUUCUAGcauugccaguaacaaaauggcaagcuCGAAGUCUUUGGGGAGAGUGGacaaacguugucucgaauaugc
.......(((((((......(((.((((((((((.((((((((((.(((.((((((.........))))))))).)))))))))))))))))))).)))....))))))).......

Structure

gccaaca       uuucua   c          U          U   a      gua 
       cgaggca      uug ucACUCUUUC CAAGGGCUUC AGc uugcca   a
       |||||||      ||| |||||||||| |||||||||| ||| ||||||   c
       gcucugu      aac GGUGAGAGGG GUUUCUGAAG ucg aacggu   a
cguauaa       --ugca   a          -          C   -      aaa 

Annotation confidence Not enough data

Genome context

chr2: 1237689-1237805 [+]

Mature vvi-miR477b-5p

• Accession: MIMAT0018025
• Description: Vitis vinifera vvi-miR477b-5p mature miRNA
• Sequence: 27 - ACUCUUUCUCAAGGGCUUCUAG - 48
• Evidence: experimental ; Illumina [1]

Mature vvi-miR477b-3p

• Accession: MIMAT0018026
• Description: Vitis vinifera vvi-miR477b-3p mature miRNA
• Sequence: 75 - CGAAGUCUUUGGGGAGAGUGG - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976