Stem-loop vvi-MIR171i

Accession

MI0006543

Description

Vitis vinifera vvi-MIR171i precursor miRNA

Literature search

4 open access papers mention vvi-MIR171i
(14 sentences)

Sequence

958 reads, 64 reads per million, 2 experiments

gaagaagguggggauguuggaauggcucaaucaaaucaaaucucccaaggguuuuggguccuuuaaucUGAUUGAGCCGUGCCAAUAUCaucauguucacuuc
...(((.((((.((((((((.((((((((((((.((.(((...(((((.....)))))...))).)).)))))))))))).)))))))).)))).))).....

Structure

--gaa   g    g        a            a  c   ucu     g 
     gaa gugg gauguugg auggcucaauca au aaa   cccaa g
     ||| |||| |||||||| |||||||||||| || |||   ||||| g
     cuu uacu CUAUAACC UGCCGAGUUAGU ua uuu   ggguu u
cuuca   g    a        G            c  a   ccu     u 

Annotation confidence Not enough data

Genome context

chr17: 893534-893636 [+]

Mature vvi-miR171i

• Accession: MIMAT0005698
• Description: Vitis vinifera vvi-miR171i mature miRNA
• Sequence: 69 - UGAUUGAGCCGUGCCAAUAUC - 89
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558