Stem-loop vvi-MIR395b

Accession

MI0006557

Description

Vitis vinifera vvi-MIR395b precursor miRNA

Literature search

6 open access papers mention vvi-MIR395b
(23 sentences)

Sequence

7051 reads, 473 reads per million, 2 experiments

guccccuagaguuccccuuaccacuucacuggggaucuucucuaaugaaugccuacguaCUGAAGUGUUUGGGGGAACUCcuggugccau
....((..((((((((((...((((((((((((.((..((......)))).)))).))...))))))...))))))))))..))......

Structure

--gucc  ua          uac      ---  -    g  cu  uc 
      cc  gaguuccccu   cacuuc   ac uggg au  uc  u
      ||  ||||||||||   ||||||   || |||| ||  ||   
      gg  CUCAAGGGGG   GUGAAG   ug aucc ua  ag  a
uaccgu  uc          UUU      UCa  c    g  --  ua 

Annotation confidence Not enough data

Genome context

chr1: 6502664-6502753 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from vvi-MIR395b

Mature vvi-miR395b

• Accession: MIMAT0005712
• Description: Vitis vinifera vvi-miR395b mature miRNA
• Sequence: 60 - CUGAAGUGUUUGGGGGAACUC - 80
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558