Stem-loop vvi-MIR399e

Accession

MI0006575

Description

Vitis vinifera vvi-MIR399e precursor miRNA

Literature search

4 open access papers mention vvi-MIR399e
(11 sentences)

Sequence

43 reads, 3 reads per million, 2 experiments

gcauauuacagggcaaauuaucuuuuggcaggcagccacuuagagacacagccaagccaugcauucuuguagugugcccucUGCCAAAGGAGAUUUGCCCGGcaauucuucu
..........(((((((((.((((((((((((..((((((..((((....((........))..))))..)))).))..)))))))))))))))))))))............

Structure

--gcauauuaca         a            ca  -    ua    caca  caa 
            gggcaaauu ucuuuuggcagg  gc cacu  gaga    gc   g
            ||||||||| ||||||||||||  || ||||  ||||    ||    
            CCCGUUUAG AGGAAACCGUcu  cg guga  uucu    cg   c
ucuucuuaacGG         -            cc  u    ug    --ua  uac 

Annotation confidence Not enough data

Genome context

chr10: 2992220-2992331 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from vvi-MIR399e

Mature vvi-miR399e

• Accession: MIMAT0005730
• Description: Vitis vinifera vvi-miR399e mature miRNA
• Sequence: 82 - UGCCAAAGGAGAUUUGCCCGG - 102
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467