Stem-loop vvi-MIR169o

Accession

MI0007945

Description

Vitis vinifera vvi-MIR169o precursor miRNA

Literature search

8 open access papers mention vvi-MIR169o
(16 sentences)

Sequence

22131 reads, 175.0 reads per million, 163 experiments

aggguggauuUGAGCCAAGGAUGACUUGCCGccaucagcagcaagcauugaagcuuuaacugggcauggacaGCGAGUUAUUCUUGGCUCAUGcggccccucu
.((((.(.(.(((((((((((((((((((.(((((...(((.((((......))))...)))...)))).).))))))))))))))))))).)).))))....

Structure

---a    g a u                   C -    cag   --c    au 
    gggu g u UGAGCCAAGGAUGACUUGC G ccau   cag   aagc  u
    |||| | | ||||||||||||||||||| | ||||   |||   ||||   
    cccg c G ACUCGGUUCUUAUUGAGCG c ggua   guc   uucg  g
ucuc    g - U                   a a    cgg   aau    aa 

Annotation confidence High

Genome context

gb|CP126658.1|: 16441233-16441335 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR169o

Mature vvi-miR169o-5p

• Accession: MIMAT0006550
• Description: Vitis vinifera vvi-miR169o-5p mature miRNA
• Sequence: 11 - UGAGCCAAGGAUGACUUGCCG - 31
• Evidence: experimental ; Array [2]

Mature vvi-miR169o-3p

• Accession: MIMAT0055871
• Description: Vitis vinifera vvi-miR169o-3p mature miRNA
• Sequence: 73 - GCGAGUUAUUCUUGGCUCAUG - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558