Stem-loop vvi-MIR171g

Accession

MI0007950

Description

Vitis vinifera vvi-MIR171g precursor miRNA

Literature search

5 open access papers mention vvi-MIR171g
(16 sentences)

Sequence

1 reads, 0 reads per million, 1 experiments

gccagccucuccauguugguuccaucggugggggacaccaacuccUUGAGCCGAACCAAUAUCACCcgagccaaau
....(.(((...((((((((((..((((.((((........))))))))...)))))))))).....))).)....

Structure

gcca c   --ucc          -ca    u    gac 
    g cuc     auguugguuc   ucgg gggg   a
    | |||     ||||||||||   |||| ||||    
    c gag     UAUAACCAAG   AGUU ccuc   c
uaaa c   cCCAC          CCG    -    aac 

Annotation confidence Not enough data

Genome context

chr18: 3255625-3255700 [+]

Mature vvi-miR171g

• Accession: MIMAT0006555
• Description: Vitis vinifera vvi-miR171g mature miRNA
• Sequence: 46 - UUGAGCCGAACCAAUAUCACC - 66
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558