Stem-loop vvi-MIR164b

Accession

MI0006504

Description

Vitis vinifera vvi-MIR164b precursor miRNA

Literature search

5 open access papers mention vvi-MIR164b
(16 sentences)

Sequence

51 reads, 3 reads per million, 2 experiments

uaaaccaugcUGGAGAAGCAGGGCACAUGCUggaucaaucagcaccuggaucugagauuuuacaugugcccuggcucucccacuuggauccua
....(((.(..(((((..(((((((((((..(((((..((((.........)))))))))..)))))))))))..)))))..).)))......

Structure

--uaaa   u cU     AG           CU     aa    cac 
      cca g  GGAGA  CAGGGCACAUG  ggauc  ucag   c
      ||| |  |||||  |||||||||||  |||||  ||||   u
      ggu c  ccucu  gucccguguac  uuuag  aguc   g
auccua   u ac     cg           au     --    uag 

Annotation confidence Not enough data

Genome context

chr9: 514758-514850 [-]

Mature vvi-miR164b

• Accession: MIMAT0005659
• Description: Vitis vinifera vvi-miR164b mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACAUGCU - 31
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558