Stem-loop vvi-MIR171a

Accession

MI0006536

Description

Vitis vinifera vvi-MIR171a precursor miRNA

Literature search

7 open access papers mention vvi-MIR171a
(18 sentences)

Sequence

2005636 reads, 5832.0 reads per million, 220 experiments

uggugggaagcgUGAUGUUGGGACGGCUCAAUCaaaccaaagaucucaaugguugaguccuuuaaucUGAUUGAGCCGUGCCAAUAUCauguucaauac
..(((...(((((((((((((.((((((((((((....((((..(((((...)))))..))))....)))))))))))).)))))))))))))...)))

Structure

ug   gga             G            aacc    au     u 
  gug   agcgUGAUGUUGG ACGGCUCAAUCa    aaag  cucaa  
  |||   ||||||||||||| ||||||||||||    ||||  ||||| g
  cau   uuguaCUAUAACC UGCCGAGUUAGU    uuuc  gaguu  
--   aac             G            cuaa    cu     g 

Annotation confidence Medium

Genome context

gb|CP126661.1|: 25397742-25397840 [-]

Mature vvi-miR171a-5p

• Accession: MIMAT0055820
• Description: Vitis vinifera vvi-miR171a-5p mature miRNA
• Sequence: 13 - UGAUGUUGGGACGGCUCAAUC - 33
• Evidence: experimental ; unknown

Mature vvi-miR171a-3p

• Accession: MIMAT0005691
• Description: Vitis vinifera vvi-miR171a-3p mature miRNA
• Sequence: 68 - UGAUUGAGCCGUGCCAAUAUC - 88
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558