Stem-loop vvi-MIR160e

Accession

MI0006501

Description

Vitis vinifera vvi-MIR160e precursor miRNA

Literature search

4 open access papers mention vvi-MIR160e
(23 sentences)

Sequence

1347 reads, 90 reads per million, 2 experiments

uaagcauauaUGCCUGGCUCCCUGUAUGCCAuuugcagagcccaccggcacaucgauggccuucguggauggcguaugaggagccaugcauaugccccaucu
...(((((..(((.(((((((.((((((((((((((.(((.(((.((......)).))).))).)))))))))))))).))))))).)))))))).......

Structure

----uaa     ua   C       C              a   c   c  gc 
       gcaua  UGC UGGCUCC UGUAUGCCAuuugc gag cca cg  a
       |||||  ||| ||||||| |||||||||||||| ||| ||| ||   
       cguau  acg accgagg guaugcgguaggug uuc ggu gc  c
ucuaccc     --   u       a              c   c   a  ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature vvi-miR160e

• Accession: MIMAT0005656
• Description: Vitis vinifera vvi-miR160e mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558