Stem-loop vvi-MIR169r

Accession

MI0006532

Description

Vitis vinifera vvi-MIR169r precursor miRNA

Literature search

8 open access papers mention vvi-MIR169r
(17 sentences)

Sequence

132768 reads, 791.0 reads per million, 206 experiments

aggguggaauUGAGUCAAGGAUGACUUGCCGauauauauuugcagaaggcaugcaggggcuuuuagcuauguguaaccGGCAAGUUGACUUGACUCAGUuuggcccucu
(((((.(((((((((((((...(((((((((.(((((((..((.((((((........)))))).)).)))))))..)))))))))..))))))))))))).)))))..

Structure

--     g             GAU         -a       uu  a      aug 
  agggu gaauUGAGUCAAG   GACUUGCCG  uauauau  gc gaaggc   c
  ||||| |||||||||||||   |||||||||  |||||||  || ||||||    
  ucccg uuUGACUCAGUUC   UUGAACGGc  augugua  cg uuuucg   a
uc     g             -AG         ca       -u  a      ggg 

Annotation confidence High

Genome context

gb|CP126658.1|: 16665457-16665565 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR169r

Mature vvi-miR169r-5p

• Accession: MIMAT0005687
• Description: Vitis vinifera vvi-miR169r-5p mature miRNA
• Sequence: 11 - UGAGUCAAGGAUGACUUGCCG - 31
• Evidence: experimental ; Array [2]

Mature vvi-miR169r-3p

• Accession: MIMAT0055816
• Description: Vitis vinifera vvi-miR169r-3p mature miRNA
• Sequence: 79 - GGCAAGUUGACUUGACUCAGU - 99
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558