Stem-loop vvi-MIR172b

Accession

MI0006545

Description

Vitis vinifera vvi-MIR172b precursor miRNA

Literature search

9 open access papers mention vvi-MIR172b
(35 sentences)

Sequence

uauugccgaugcagcaucaucaagauucucaaccccaaaacuugaggcagcgaagauggcaucgcugccgcgccgggcuuucgcaugUGAAUCUUGAUGAUGCUACACcugcaaacaa
..((((.(.((.((((((((((((((((.((.........((((.((((((((........)))))))).))..)).........)).)))))))))))))))).)).).))))....

Structure

--ua    c a  c                u  accccaaaa  --  a        aga 
    uugc g ug agcaucaucaagauuc ca         cu  ug ggcagcga   u
    |||| | || |||||||||||||||| ||         ||  || ||||||||    
    aacg c AC UCGUAGUAGUUCUAAG gu         gg  gc ccgucgcu   g
aaca    u C  A                U  acgcuuucg  cc  g        acg 

Annotation confidence Not enough data

Genome context

chr13: 6181370-6181487 [+]

Mature vvi-miR172b

• Accession: MIMAT0005700
• Description: Vitis vinifera vvi-miR172b mature miRNA
• Sequence: 88 - UGAAUCUUGAUGAUGCUACAC - 108
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467