miRBase entry: 23324356

Developmentally regulated expression and complex processing of barley pri-microRNAs

PubMed ID 23324356
Authors Kruszka K, Pacak A, Swida-Barteczka A, Stefaniak AK, Kaja E, Sierocka I, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z
Journal BMC Genomics
Volume 14
Pages 34

There are 141 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
hvu-MIR159a MI0016452 None BACC01000259.1 1889 2066 + -
hvu-MIR166a MI0016455 None None None -
hvu-MIR168 MI0016457 None None None -
hvu-MIR171 MI0016461 None None None -
hvu-MIR1120 MI0016741 None None None -
hvu-MIR397b MI0030545 None None None -
hvu-MIR156b MI0030546 None None None -
osa-MIR156a MI0000653 257272 Chr1 22524147 22524246 - -
osa-MIR156b MI0000654 258339 Chr1 4666341 4666516 + High
osa-MIR156c MI0000655 258287 Chr1 4665975 4666123 + High
osa-MIR156d MI0000656 375099 Chr2 4512884 4513012 - -
osa-MIR156e MI0000657 257257 Chr4 25026327 25026430 - -
osa-MIR156f MI0000658 374943 Chr8 21478230 21478415 + High
osa-MIR156g MI0000659 258296 Chr9 15065253 15065368 + High
osa-MIR156h MI0000660 374943 Chr8 21491232 21491417 + High
osa-MIR156i MI0000661 257274 Chr2 24119995 24120084 - -
osa-MIR156j MI0000662 374978 Chr6 26554795 26554959 + High
osa-MIR166a MI0000670 19323 Chr10 19987135 19987279 + High
osa-MIR166b MI0000671 19371 Chr6 30327084 30327289 - High
osa-MIR166c MI0000672 19151 Chr3 3487788 3487912 + High
osa-MIR166d MI0000673 19377 Chr2 26130059 26130183 + High
osa-MIR166e MI0000674 36 Chr3 765724 765860 + -
osa-MIR166f MI0000675 19281 Chr10 14483290 14483396 - -
osa-MIR171a MI0000680 7 Chr6 25891132 25891227 + -
osa-MIR393a MI0001026 98 Chr1 2309149 2309263 - -
osa-MIR397a MI0001049 361 Chr6 28489785 28489898 + -
osa-MIR397b MI0001050 315 Chr2 3280781 3280898 - -
osa-MIR156k MI0001090 871 Chr9 18289107 18289212 - -
osa-MIR156l MI0001091 10220 Chr5 5230609 5230764 + High
osa-MIR159a MI0001092 1717 Chr1 17681923 17682194 + -
osa-MIR159b MI0001093 1371 Chr1 1215030 1215217 + -
osa-MIR159c MI0001094 62 Chr1 6556048 6556244 - -
osa-MIR159d MI0001095 44 Chr1 6563756 6563944 - -
osa-MIR159e MI0001096 46 Chr1 9760708 9760898 - -
osa-MIR159f MI0001097 83 Chr1 6693112 6693299 + -
osa-MIR319b MI0001099 227 Chr1 6677570 6677766 - -
osa-MIR166k MI0001107 1477 Chr2 32435003 32435129 - High
osa-MIR166l MI0001108 1522 Chr9 16951817 16951933 + High
osa-MIR168a MI0001115 282915 Chr2 1553154 1553240 - High
osa-MIR168b MI0001116 1 Chr2 27336428 27336533 + -
osa-MIR169f MI0001121 845 Chr2 18558299 18558512 - -
osa-MIR171b MI0001133 363 Chr8 5369153 5369252 + -
osa-MIR171c MI0001134 391 Chr4 31713472 31713570 - High
osa-MIR171d MI0001135 369 Chr10 21237313 21237447 + High
osa-MIR171e MI0001136 369 Chr3 1970487 1970605 + High
osa-MIR171f MI0001137 354 Chr3 30027774 30027900 + -
osa-MIR171g MI0001138 9 Chr7 15636744 15636832 - -
osa-MIR172a MI0001139 3477 Chr9 22881834 22881942 + -
osa-MIR172b MI0001140 201 Chr1 42923736 42923973 - -
osa-MIR172c MI0001141 199 Chr7 13111485 13111595 - -
osa-MIR166g MI0001142 19256 Chr12 18329367 18329511 + -
osa-MIR166h MI0001143 17849 Chr2 32435174 32435292 - High
osa-MIR166i MI0001144 443 Chr3 25294953 25295097 + -
osa-MIR171h MI0001147 61 Chr4 28482456 28482556 + -
osa-MIR393b MI0001148 216 Chr4 34931876 34932007 - High
osa-MIR172d MI0001154 3505 Chr2 35143537 35143666 - High
osa-MIR171i MI0001155 92 Chr3 21191603 21191722 + High
osa-MIR166m MI0001157 17946 Chr8 23045356 23045555 + -
osa-MIR166j MI0001158 19511 None None -
zma-MIR156d MI0001456 207336 chr5 94725847 94725965 - High
zma-MIR156f MI0001457 135637 chr2 185613978 185614144 - High
zma-MIR156g MI0001458 130978 chr7 119411284 119411404 + High
zma-MIR156b MI0001459 201162 chr3 6928278 6928401 - -
zma-MIR156c MI0001460 129128 None None -
zma-MIR156e MI0001461 132496 chr2 33005026 33005151 + High
zma-MIR156a MI0001462 130538 chr4 87069146 87069297 - -
zma-MIR156h MI0001463 133708 chr10 129642870 129642984 - -
zma-MIR156i MI0001464 134769 chr4 140280587 140280703 - High
zma-MIR166a MI0001480 353330 chr6 87381728 87381940 + High
zma-MIR166h MI0001482 356574 chr1 279585912 279585987 - -
zma-MIR166e MI0001483 350283 chr5 195602244 195602330 + -
zma-MIR166i MI0001485 353816 chr1 244940015 244940097 + High
zma-MIR166f MI0001486 356623 chr5 8289186 8289263 + -
zma-MIR166g MI0001487 362638 chr1 13782628 13782753 + High
zma-MIR166b MI0001488 349995 chr1 226759256 226759371 - High
zma-MIR166c MI0001489 350268 chr4 153858453 153858544 + -
zma-MIR166d MI0001490 349994 chr5 22443534 22443637 - High
zma-MIR171a MI0001491 284 chr4 239713555 239713653 + -
zma-MIR171b MI0001492 5349 chr5 223360741 223360825 - High
zma-MIR172a MI0001493 5343 chr7 54276707 54276789 - -
zma-MIR172d MI0001494 5334 chr6 172029786 172029859 + -
zma-MIR172b MI0001495 5334 chr5 221721349 221721474 - -
zma-MIR172c MI0001496 5389 chr4 174154928 174155050 + High
zma-MIR171d MI0001792 4835 chr9 128212960 128213080 + High
zma-MIR171f MI0001793 4292 chr5 8896283 8896437 - Low
zma-MIR156j MI0001808 1457 chr7 134663764 134663888 - -
zma-MIR159a MI0001809 17754 chr8 10753073 10753318 + High
zma-MIR159b MI0001810 27471 chr8 10950933 10951153 + -
zma-MIR159c MI0001811 1799 chr3 2020760 2020976 - -
zma-MIR159d MI0001812 1381 chr8 27675686 27675902 + -
zma-MIR319b MI0001815 13480 chr3 2038966 2039178 + High
zma-MIR166k MI0001817 67163 chr5 216483766 216483933 - High
zma-MIR166j MI0001818 68413 chr7 128589394 128589547 + High
zma-MIR168a MI0001824 151808 chr5 76534928 76535031 - Low
zma-MIR168b MI0001825 151163 chr4 244520636 244520739 - High
zma-MIR169f MI0001827 1983 chr5 168617435 168617584 + -
zma-MIR171c MI0001835 39 chr2 9079646 9079763 + -
zma-MIR171j MI0001836 4710 chr10 59006552 59006680 + -
zma-MIR171e MI0001837 4498 chr1 7976712 7976837 + High
zma-MIR171i MI0001838 6821 chr1 278093492 278093595 + -
zma-MIR171g MI0001839 684 chr7 44057814 44057925 - -
zma-MIR172e MI0001840 2028 chr3 145801592 145801765 + -
zma-MIR166l MI0001841 348977 chr3 91435335 91435471 + High
zma-MIR166m MI0001842 347901 chr5 216484037 216484192 - High
zma-MIR171k MI0001843 1657 chr10 138536838 138536941 - -
zma-MIR171h MI0001844 270 chr2 18027100 18027223 - -
zma-MIR393a MI0001845 3374 chr2 738724 738849 + -
zma-MIR156k MI0001847 9178 chr6 98967260 98967382 - -
osa-MIR529a MI0003202 331 Chr2 16227805 16227903 + -
tae-MIR159a MI0006170 705805 3D 840138 840314 - High
tae-MIR159b MI0006171 704970 None None -
tae-MIR171a MI0006175 200 5A 134091588 134091717 - High
tae-MIR1120a MI0006182 137 None None Low
osa-MIR1430 MI0006970 54 Chr12 6825011 6825152 - -
zma-MIR156l MI0013184 131948 chr5 188595332 188595421 - High
zma-MIR159e MI0013185 3823 chr1 249664337 249664463 - -
zma-MIR159f MI0013186 15434 chr3 25007834 25008048 - High
zma-MIR159g MI0013187 1245 None None -
zma-MIR159h MI0013188 216 chr8 10885935 10886134 + -
zma-MIR159i MI0013189 1245 chr8 10912332 10912583 + -
zma-MIR159j MI0013190 20514 chr8 10920901 10921152 + -
zma-MIR159k MI0013191 19488 chr8 10947058 10947257 + -
zma-MIR166n MI0013197 66413 chr4 181112182 181112277 + High
zma-MIR171l MI0013206 1214 chr1 249547375 249547452 + High
zma-MIR171m MI0013207 2041 chr5 20785928 20786009 - -
zma-MIR171n MI0013208 284 chr9 100082921 100082998 - -
zma-MIR393b MI0013210 96 chr3 17997197 17997304 + -
zma-MIR393c MI0013211 555 chr10 149451810 149451906 - Low
zma-MIR397a MI0013229 149 chr3 183569171 183569313 - -
zma-MIR397b MI0013230 1114 chr5 84610591 84610674 - -
hvu-MIR156a MI0016449 None None None -
tae-MIR156 MI0016450 418 None None -
hvu-MIR159b MI0016451 None None None -
hvu-MIR397a MI0016465 None None None -
tae-MIR171b MI0016468 46 2D 132845309 132845446 - -
hvu-MIR166b MI0016742 None None None -
osa-MIR3981 MI0017256 126 Chr5 4302813 4302938 + -
hvu-MIR166c MI0018212 None None None -
tae-MIR1120b MI0030404 651 7B 15312620 15312712 + -
tae-MIR397 MI0030405 404 6A 120354266 120354358 - High
tae-MIR1120c MI0030409 188 3D 73734313 73734386 + Low



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