Stem-loop zma-MIR393c

Accession

MI0013211

Description

Zea mays zma-MIR393c precursor miRNA

Literature search

22 open access papers mention zma-MIR393c
(72 sentences)

Sequence

207 reads, 555 reads per million, 4 experiments

cUCCAAAGGGAUCGCAUUGAUCUaaccugccgaucgacgccgacguacguacgugcccgaggacaagcagaucaGUCAGUGCAAUCCCUUUGGAAUu
.(((((((((((.(((((((.((...((((...((..((...((((....))))...))..))...))))...))))))))).)))))))))))...

Structure

--c           C       U  aac    cga  ga  ccg    a 
   UCCAAAGGGAU GCAUUGA CU   cugc   uc  cg   acgu c
   ||||||||||| ||||||| ||   ||||   ||  ||   ||||  
   AGGUUUCCCUA CGUGACU Ga   gacg   ag  gc   ugca g
uUA           A       -  cua    aac  ga  ccg    u 

Annotation confidence Low

Genome context

chr10: 149451810-149451906 [-]

Mature zma-miR393c-5p

• Accession: MIMAT0014000
• Description: Zea mays zma-miR393c-5p mature miRNA
• Sequence: 2 - UCCAAAGGGAUCGCAUUGAUCU - 23
• Evidence: experimental ; Illumina [1]

Mature zma-miR393c-3p

• Accession: MIMAT0015335
• Description: Zea mays zma-miR393c-3p mature miRNA
• Sequence: 75 - GUCAGUGCAAUCCCUUUGGAAU - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716