Stem-loop zma-MIR171f

Accession

MI0001793

Description

Zea mays zma-MIR171f precursor miRNA

Literature search

21 open access papers mention zma-MIR171f
(61 sentences)

Sequence

2675 reads, 2756.0 reads per million, 95 experiments

uugguuguuggcugagagaguGCGAUGUUGGCAUGGCUCAAUCAACucgccggccgcggguggcuuauagcuuaauucugcgcauucgaucgaggugcgggcgcaguguuUAAUUGAUUGAGCCGUGCCAAUAUCacaaccuucucuagccuaua
.........(((((((((.(((.(((((((((((((((((((((((((((.....))))))((((...)))).(((.((((((..(((..(...)..))))))))).)))....))))))))))))))))))))).).)).))))).))))....

Structure

uugguuguu    -     a  - C                     -----------------------------------------------------      c 
         ggcu gagag gu G GAUGUUGGCAUGGCUCAAUCA                                                     ACucgc g
         |||| ||||| || | |||||||||||||||||||||                                                     |||||| g
         ccga cucuu ca c CUAUAACCGUGCCGAGUUAGU                                                     ugggcg c
-----auau    u     c  a a                     UAAUuugugacgcgggcguggagcuagcuuacgcgucuuaauucgauauucgg      c 

Annotation confidence Medium

Genome context

5: 9060707-9060861 [-]

Mature zma-miR171f-5p

• Accession: MIMAT0015161
• Description: Zea mays zma-miR171f-5p mature miRNA
• Sequence: 22 - GCGAUGUUGGCAUGGCUCAAUCAAC - 46
• Evidence: experimental ; Illumina [3]

Mature zma-miR171f-3p

• Accession: MIMAT0001695
• Description: Zea mays zma-miR171f-3p mature miRNA
• Sequence: 111 - UAAUUGAUUGAGCCGUGCCAAUAUC - 135
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


3. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13