Stem-loop zma-MIR159d

Accession

MI0001812

Description

Zea mays zma-MIR159d precursor miRNA

Literature search

32 open access papers mention zma-MIR159d
(154 sentences)

Sequence

2202 reads, 4521.0 reads per million, 113 experiments

aagaagaugccgaucgaucGAAGAGCUCCCUUCGAUCCAAUCCaggagggaaaguggucggcugcagcugccgguucauggauaccucucuggugcagcaauggccgagaugcucaccugcacuugcaugggugugcaugacccgggagacgaaccgaccaucaucuuucccucGUGCUUGGAUUGAAGGGAGCUCCucucucucucucucucuuau
(((((((....((..((..((.((((((((((((((((((..((.((((((((((((((((......((.((((.(((((.((((((....(((((((....(((......)))...))))))).....)))))).))))).)))).)).....)))))))....))))))))).)).)))))))))))))))))).))..))..))))).))))..

Structure

--    -   ugcc  uc  uc  A                  UC  g         ----       cugcag  g    u     g      -cucu       caau   cg 
  aaga aga    ga  ga  GA GAGCUCCCUUCGAUCCAA  Ca gagggaaag    uggucgg      cu ccgg ucaug auaccu     ggugcag    ggc  a
  |||| |||    ||  ||  || ||||||||||||||||||  || |||||||||    |||||||      || |||| ||||| ||||||     |||||||    |||   
  uucu ucu    cu  cu  cu CUCGAGGGAAGUUAGGUU  GU cucccuuuc    accagcc      ga ggcc aguac uguggg     ucacguc    ucg  g
ua    c   ----  cu  cu  C                  -C  G         uacu       -aagca  g    c     g      uacgu       -cac   ua 

Annotation confidence Medium

Genome context

8: 27527989-27528205 [+]

Mature zma-miR159d-5p

• Accession: MIMAT0015179
• Description: Zea mays zma-miR159d-5p mature miRNA
• Sequence: 20 - GAAGAGCUCCCUUCGAUCCAAUCC - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR159d-3p

• Accession: MIMAT0001714
• Description: Zea mays zma-miR159d-3p mature miRNA
• Sequence: 175 - GUGCUUGGAUUGAAGGGAGCUCC - 197
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13