Stem-loop zma-MIR393a

Accession

MI0001845

Description

Zea mays zma-MIR393a precursor miRNA

Literature search

21 open access papers mention zma-MIR393a
(76 sentences)

Sequence

218 reads, 3374 reads per million, 10 experiments

ccaggaagcugguggaggacUCCAAAGGGAUCGCAUUGAUCUauucucaccugccgccugcugcaugcgaugcgagucgacgacaagAUCAGUGCAAUCCCUUUGGAAUuuuccacucgcgccuuc
..(((..((.(((((((((.(((((((((((.((((((((((..((((((.((((((.((...)).)))..))).)).)).))..)))))))))).))))))))))).))))))))).)).)))..

Structure

cc   aa  u         c           C          au  -  -  c   --   c  c 
  agg  gc gguggagga UCCAAAGGGAU GCAUUGAUCU  uc uc ac ugc  cgc ug  
  |||  || ||||||||| ||||||||||| ||||||||||  || || || |||  ||| || u
  ucc  cg ucaccuuuU AGGUUUCCCUA CGUGACUAga  ag ag ug gcg  gcg ac  
cu   -g  c         A           A          ac  c  c  a   ua   u  g 

Annotation confidence Not enough data

Genome context

chr2: 738724-738849 [+]

Mature zma-miR393a-5p

• Accession: MIMAT0001747
• Description: Zea mays zma-miR393a-5p mature miRNA
• Sequence: 21 - UCCAAAGGGAUCGCAUUGAUCU - 42
• Evidence: experimental ; Illumina [2]

Mature zma-miR393a-3p

• Accession: MIMAT0015207
• Description: Zea mays zma-miR393a-3p mature miRNA
• Sequence: 88 - AUCAGUGCAAUCCCUUUGGAAU - 109
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13