Stem-loop zma-MIR393a

Accession

MI0001845

Description

Zea mays zma-MIR393a precursor miRNA

Literature search

22 open access papers mention zma-MIR393a
(78 sentences)

Sequence

526 reads, 1362.0 reads per million, 52 experiments

ccaggaagcugguggAGGACUCCAAAGGGAUCGCAUUGAUcuauucucaccugccgccugcugcaugcgaugcgagucgacgacaagaucAGUGCAAUCCCUUUGGAAUUuuccacucgcgccuuc
..(((..((.(((((((((.(((((((((((.((((((((((..((((((.((((((.((...)).)))..))).)).)).))..)))))))))).))))))))))).))))))))).)).)))..

Structure

cc   aa  u         C           C          au  -  -  c   --   c  c 
  agg  gc gguggAGGA UCCAAAGGGAU GCAUUGAUcu  uc uc ac ugc  cgc ug  
  |||  || ||||||||| ||||||||||| ||||||||||  || || || |||  ||| || u
  ucc  cg ucaccuuUU AGGUUUCCCUA CGUGAcuaga  ag ag ug gcg  gcg ac  
cu   -g  c         A           A          ac  c  c  a   ua   u  g 

Annotation confidence Medium

Genome context

2: 1029135-1029260 [+]

Mature zma-miR393a-5p

• Accession: MIMAT0001747
• Description: Zea mays zma-miR393a-5p mature miRNA
• Sequence: 16 - AGGACUCCAAAGGGAUCGCAUUGAU - 40
• Evidence: experimental ; Illumina [2]

Mature zma-miR393a-3p

• Accession: MIMAT0015207
• Description: Zea mays zma-miR393a-3p mature miRNA
• Sequence: 91 - AGUGCAAUCCCUUUGGAAUU - 110
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13