Stem-loop zma-MIR159c

Accession

MI0001811

Description

Zea mays zma-MIR159c precursor miRNA

Literature search

31 open access papers mention zma-MIR159c
(154 sentences)

Sequence

2118 reads, 4327.0 reads per million, 112 experiments

augauuaagaaaggcgaucGAAGAGCUCCCUUCGAUCCAAUCCaggaggggaaguggucgguugcagcugccgguucauggauaccucucuggugcagcaauggccgcugcucaccucugcacuugcaugggugugcaugacccgggagaugagcccgccaucaucuuucccucGUGCUUGGAUUGAAGGGAGCUCCucucugucugucugucuguc
.......(((.(((((((.((.((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.(((((.((((((....(((((((...((((....)).))...))))))).....)))))).))))).)))).)).)))))).))))....))))))))).)).))))))))))))))))))...)).))).)))).)))...

Structure

augauua   a    -   c  --A                  UC  g         ----    c    g  g  g    u     g      -cucu       caa  -  c 
       aga aggc gau GA   GAGCUCCCUUCGAUCCAA  Ca gaggggaag    uggu gguu ca cu ccgg ucaug auaccu     ggugcag   ug gc g
       ||| |||| ||| ||   ||||||||||||||||||  || |||||||||    |||| |||| || || |||| ||||| ||||||     |||||||   || ||  
       ucu ucug cug cu   CUCGAGGGAAGUUAGGUU  GU cucccuuuc    accg ccga gu ga ggcc aguac uguggg     ucacguc   ac cg c
----cug   g    u   u  cuC                  -C  G         uacu    c    -  a  g    c     g      uacgu       ucc  u  u 

Annotation confidence Medium

Genome context

3: 2827135-2827351 [-]

Mature zma-miR159c-5p

• Accession: MIMAT0015178
• Description: Zea mays zma-miR159c-5p mature miRNA
• Sequence: 20 - GAAGAGCUCCCUUCGAUCCAAUCC - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR159c-3p

• Accession: MIMAT0001713
• Description: Zea mays zma-miR159c-3p mature miRNA
• Sequence: 175 - GUGCUUGGAUUGAAGGGAGCUCC - 197
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13