Stem-loop osa-MIR171g

Accession

MI0001138

Description

Oryza sativa osa-MIR171g precursor miRNA

Literature search

42 open access papers mention osa-MIR171g
(152 sentences)

Sequence

10 reads, 9 reads per million, 2 experiments

gacauggcaugguauugacuuggcucaucucagcaacagcaaacugcaugcagcgcugGAGGUGAGCCGAGCCAAUAUCacuucauguc
(((((((..((((((((.(((((((((((((.....((((...(((....))).))))))))))))))))).))))))))..)))))))

Structure

       ca        a             agcaa    aaa   c 
gacaugg  ugguauug cuuggcucaucuc     cagc   cug a
|||||||  |||||||| |||||||||||||     ||||   |||  
cuguacu  aCUAUAAC GAGCCGAGUGGAG     gucg   gac u
       uc        C             -----    --c   g 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR171 family [1]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.

Genome context

Chr7: 15636744-15636832 [-]

Mature osa-miR171g

• Accession: MIMAT0001068
• Description: Oryza sativa osa-miR171g mature miRNA
• Sequence: 59 - GAGGUGAGCCGAGCCAAUAUC - 79
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799