Stem-loop zma-MIR166h

Accession

MI0001482

Description

Zea mays zma-MIR166h precursor miRNA

Literature search

33 open access papers mention zma-MIR166h
(192 sentences)

Sequence

147064 reads, 14740.0 reads per million, 111 experiments

gGGGAAUGACGUCCGGUCCGAACGAGccacggcugcugcugcgccgccgcgggcuUCGGACCAGGCUUCAUUCCCC
(((((((((.(((.(((((((...((((.((((.((......)).))))..))))))))))).))).)))))))))

Structure

         C   C       ACG    -a    u  ug 
gGGGAAUGA GUC GGUCCGA   AGcc  cggc gc  c
||||||||| ||| |||||||   ||||  |||| ||   
CCCCUUACU CGG CCAGGCU   ucgg  gccg cg  u
         U   A       ---    gc    c  cg 

Annotation confidence High

Genome context

1: 281340990-281341065 [-]

Mature zma-miR166h-5p

• Accession: MIMAT0015148
• Description: Zea mays zma-miR166h-5p mature miRNA
• Sequence: 2 - GGGAAUGACGUCCGGUCCGAACGAG - 26
• Evidence: experimental ; Illumina [2]

Mature zma-miR166h-3p

• Accession: MIMAT0001377
• Description: Zea mays zma-miR166h-3p mature miRNA
• Sequence: 56 - UCGGACCAGGCUUCAUUCCCC - 76
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716