Stem-loop zma-MIR171h

Accession

MI0001844

Description

Zea mays zma-MIR171h precursor miRNA

Literature search

22 open access papers mention zma-MIR171h
(57 sentences)

Sequence

209 reads, 764.0 reads per million, 48 experiments

gggaggaaggagacgacAUGGCGUGGUAUUGUUUCGGCUcauguccuucuucgaucgagucuugccguuggauuuggauguGAUGUGAGCCGAACCAAUAUCACUCauguacucuucauuccca
(((((..(((((...((((((.(((((((((.((((((((((((((.(((..((((.((........)).)))).))).).))))))))))))).))))))))))))))).)))))..))))).

Structure

-     ga     acg      C         U             - u   uc    g  ucu 
 gggag  aggag   acAUGG GUGGUAUUG UUCGGCUcauguc c ucu  gauc ag   u
 |||||  |||||   |||||| ||||||||| ||||||||||||| | |||  |||| ||    
 cccuu  uucuc   uguaCU CACUAUAAC AAGCCGAGUGUAG g agg  uuag uu   g
a     ac     --a      -         C             u u   -u    g  gcc 

Annotation confidence Medium

Genome context

2: 18233872-18233995 [-]

Mature zma-miR171h-5p

• Accession: MIMAT0015206
• Description: Zea mays zma-miR171h-5p mature miRNA
• Sequence: 18 - AUGGCGUGGUAUUGUUUCGGCU - 39
• Evidence: experimental ; Illumina [2]

Mature zma-miR171h-3p

• Accession: MIMAT0001746
• Description: Zea mays zma-miR171h-3p mature miRNA
• Sequence: 82 - GAUGUGAGCCGAACCAAUAUCACUC - 106
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13