Stem-loop zma-MIR171c

Accession

MI0001835

Description

Zea mays zma-MIR171c precursor miRNA

Literature search

20 open access papers mention zma-MIR171c
(55 sentences)

Sequence

10 reads, 198.0 reads per million, 7 experiments

ggggaaucgaaaaccuacgggaUAUUGGUGCGGUUCAAUCAGAaagcuugcgcuccaaagcccaggggcuccacucuuUGACUGAGCCGUGCCAAUAUCacguccucgcuuugcuugc
(((((............((.(((((((((((((((((.(((((.((...(.(((((........))))).)..)).))))).))))))))))))))))).)))))))...........

Structure

-----------     aucgaaaaccua  g                 A     a  cuu c     aaa 
           gggga            cg gaUAUUGGUGCGGUUCA UCAGA ag   g gcucc   g
           |||||            || ||||||||||||||||| ||||| ||   | |||||    
           cuccu            gc CUAUAACCGUGCCGAGU AGUuu uc   c cgggg   c
cguucguuucg     ------------  a                 C     c  -ac u     acc 

Annotation confidence Not enough data

Genome context

2: 9342047-9342164 [+]

Mature zma-miR171c-5p

• Accession: MIMAT0015198
• Description: Zea mays zma-miR171c-5p mature miRNA
• Sequence: 23 - UAUUGGUGCGGUUCAAUCAGA - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR171c-3p

• Accession: MIMAT0001737
• Description: Zea mays zma-miR171c-3p mature miRNA
• Sequence: 79 - UGACUGAGCCGUGCCAAUAUC - 99
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13