Stem-loop zma-MIR171k

Accession

MI0001843

Description

Zea mays zma-MIR171k precursor miRNA

Literature search

19 open access papers mention zma-MIR171k
(50 sentences)

Sequence

66 reads, 1657 reads per million, 7 experiments

gggaggaagaagacgacauggcgUGGUAUUGUUUCGGCUCAUGUccuucuugacuggaugugauGUGAGCCGAACCAAUAUCACUcauguauucuucauucuga
...((((.(((((..((((((.(((((((((.((((((((((((((.(((.....))).).))))))))))))).)))))))))))))))..))))).))))..

Structure

ggg    a     cg      c         U             - u   u 
   agga gaaga  acaugg gUGGUAUUG UUCGGCUCAUGUc c ucu g
   |||| |||||  |||||| ||||||||| ||||||||||||| | ||| a
   ucuu cuucu  uguacU CACUAUAAC AAGCCGAGUGuag g agg c
-ag    a     ua      -         C             u u   u 

Annotation confidence Not enough data

Genome context

chr10: 138536838-138536941 [-]

Mature zma-miR171k-5p

• Accession: MIMAT0015205
• Description: Zea mays zma-miR171k-5p mature miRNA
• Sequence: 24 - UGGUAUUGUUUCGGCUCAUGU - 44
• Evidence: experimental ; Illumina [2]

Mature zma-miR171k-3p

• Accession: MIMAT0001745
• Description: Zea mays zma-miR171k-3p mature miRNA
• Sequence: 65 - GUGAGCCGAACCAAUAUCACU - 85
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13