Stem-loop zma-MIR171k

Accession

MI0001843

Description

Zea mays zma-MIR171k precursor miRNA

Literature search

19 open access papers mention zma-MIR171k
(53 sentences)

Sequence

211 reads, 804.0 reads per million, 47 experiments

gggaggaagaagacgacAUGGCGUGGUAUUGUUUCGGCUcauguccuucuugacuggauguGAUGUGAGCCGAACCAAUAUCACUCauguauucuucauucuga
...((((.(((((..((((((.(((((((((.((((((((((((((.(((.....))).).))))))))))))).)))))))))))))))..))))).))))..

Structure

ggg    a     cg      C         U             - u   u 
   agga gaaga  acAUGG GUGGUAUUG UUCGGCUcauguc c ucu g
   |||| |||||  |||||| ||||||||| ||||||||||||| | ||| a
   ucuu cuucu  uguaCU CACUAUAAC AAGCCGAGUGUAG g agg c
-ag    a     ua      -         C             u u   u 

Annotation confidence Medium

Genome context

10: 139973227-139973330 [-]

Mature zma-miR171k-5p

• Accession: MIMAT0015205
• Description: Zea mays zma-miR171k-5p mature miRNA
• Sequence: 18 - AUGGCGUGGUAUUGUUUCGGCU - 39
• Evidence: experimental ; Illumina [2]

Mature zma-miR171k-3p

• Accession: MIMAT0001745
• Description: Zea mays zma-miR171k-3p mature miRNA
• Sequence: 62 - GAUGUGAGCCGAACCAAUAUCACUC - 86
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13