Stem-loop zma-MIR166g

Accession

MI0001487

Description

Zea mays zma-MIR166g precursor miRNA

Literature search

33 open access papers mention zma-MIR166g
(191 sentences)

Sequence

123402 reads, 362638 reads per million, 11 experiments

ggGGAAUGUUGUCUGGUUGGAGAccuaacaccrcgaauuaaucauccaugccauggaagcagcauaugcccgccugcaucuauccaugcaugaugguggaagguuUCGGACCAGGCUUCAUUCCCc
((((((((..((((((((.(((((((..((((........(((((.((((..(((((.(((((........).)))).))))).)))).)))))))))..))))))).))))))))..))))))))

Structure

        UU        G       aa    rcgaauua     c    cc     a    - aua 
ggGGAAUG  GUCUGGUU GAGAccu  cacc        aucau caug  augga gcag c   u
||||||||  |||||||| |||||||  ||||        ||||| ||||  ||||| |||| |    
cCCCUUAC  CGGACCAG CUuugga  gugg        uagua guac  uaucu cguc g   g
        UU        G       ag    --------     c    -c     a    c ccc 

Annotation confidence High

Genome context

chr1: 13782628-13782753 [+]

Mature zma-miR166g-5p

• Accession: MIMAT0015150
• Description: Zea mays zma-miR166g-5p mature miRNA
• Sequence: 3 - GGAAUGUUGUCUGGUUGGAGA - 23
• Evidence: experimental ; Illumina [2]

Mature zma-miR166g-3p

• Accession: MIMAT0001381
• Description: Zea mays zma-miR166g-3p mature miRNA
• Sequence: 106 - UCGGACCAGGCUUCAUUCCC - 125
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716