Stem-loop zma-MIR166j

Accession

MI0001818

Description

Zea mays zma-MIR166j precursor miRNA

Literature search

32 open access papers mention zma-MIR166j
(189 sentences)

Sequence

19161 reads, 68413 reads per million, 9 experiments

caaguugaagauuagguuaaggGGUUUGUUUGUCUGGUUCAAGGucgccacacagcagggaaaacccauuucgccuugaagcaugcaccaugauggguguaccuguuggugaucUCGGACCAGGCUUCAAUCCCUuuaacuagcgucugcauau
.....((.((((..((((((((((.(((...(((((((((.(((((((((....(((((....(((((((..((..((...)).)).....)))))))...)))))))))))))).)))))))))..))).))))))))))...)))).))...

Structure

caagu  a    -ua          U   UUU         A         caca     gaaa       ---uc  cu  a 
     ug agau   gguuaaggGG UUG   GUCUGGUUC AGGucgcca    gcagg    acccauu     gc  ug  
     || ||||   |||||||||| |||   ||||||||| |||||||||    |||||    |||||||     ||  || a
     ac ucug   ucaauuUCCC AAC   CGGACCAGG Ucuaguggu    ugucc    uggguag     cg  ac  
--uau  g    cga          U   -UU         C         ----     -aug       uacca  -u  g 

Annotation confidence High

Genome context

chr7: 128589394-128589547 [+]

Mature zma-miR166j-5p

• Accession: MIMAT0015185
• Description: Zea mays zma-miR166j-5p mature miRNA
• Sequence: 23 - GGUUUGUUUGUCUGGUUCAAGG - 44
• Evidence: experimental ; Illumina [2]

Mature zma-miR166j-3p

• Accession: MIMAT0001720
• Description: Zea mays zma-miR166j-3p mature miRNA
• Sequence: 115 - UCGGACCAGGCUUCAAUCCCU - 135
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13