Stem-loop zma-MIR156a

Accession

MI0001462

Description

Zea mays zma-MIR156a precursor miRNA

Literature search

54 open access papers mention zma-MIR156a
(374 sentences)

Sequence

126588 reads, 130538 reads per million, 9 experiments

uucguuccguggcuaacUGACAGAAGAGAGUGAGCACacagcgggcagacugcaucgaucgaucugcauccgagacggcgcacguacgaaugaugaugcagcugcugcugcguGCUCACUUCUCUCUCUGUCAGUccucuagcugcuacggc
.((((...(((((((((((((((((((((((((((((.((((((.(((.(((((((.((((.(((((..(((...))).))).....)).)))))))))))))))))))).)))))))).))))).)))))))))....))))))).)))).

Structure

u    ucc       ----         -     -        a      g   a       g    a  -----   au   a 
 ucgu   guggcua    acUGACAGA AGAGA GUGAGCAC cagcgg cag cugcauc aucg uc     ugc  ccg  
 ||||   |||||||    ||||||||| ||||| |||||||| |||||| ||| ||||||| |||| ||     |||  ||| g
 ggca   cgucgau    UGACUGUCU UCUCU CACUCGug gucguc guc gacguag uagu ag     acg  ggc  
c    --u       cucc         C     U        c      -   -       -    a  caugc   -c   a 

Annotation confidence Not enough data

Genome context

chr4: 87069146-87069297 [-]

Mature zma-miR156a-5p

• Accession: MIMAT0001357
• Description: Zea mays zma-miR156a-5p mature miRNA
• Sequence: 18 - UGACAGAAGAGAGUGAGCAC - 37
• Evidence: experimental ; Illumina [2]

Mature zma-miR156a-3p

• Accession: MIMAT0015129
• Description: Zea mays zma-miR156a-3p mature miRNA
• Sequence: 114 - GCUCACUUCUCUCUCUGUCAGU - 135
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716