Stem-loop zma-MIR156d

Accession

MI0001456

Description

Zea mays zma-MIR156d precursor miRNA

Literature search

51 open access papers mention zma-MIR156d
(344 sentences)

Sequence

197110 reads, 207336 reads per million, 16 experiments

aggcucucgagagauUGACAGAAGAGAGUGAGCACacggcgcgacgaacgacauagcauguaugccguccucgccgcguGCUCACUUCUCUUUCUGUCAGCcucuuucucucgauggcu
.((((.(((((((((((((((((((((((((((((.(((((.((((....((((...))))....))))..))))).)))))))).)))).)))))))))......)))))))).))))

Structure

a    c        ------         -    -        a     -c    aacg    a 
 ggcu ucgagaga      uUGACAGAA GAGA GUGAGCAC cggcg  gacg    acau  
 |||| ||||||||      ||||||||| |||| |||||||| |||||  ||||    |||| g
 ucgg agcucucu      GACUGUCUU CUCU CACUCGug gccgc  cugc    ugua  
-    u        uucucC         U    U        c     uc    cgua    c 

Annotation confidence High

Genome context

chr5: 94725847-94725965 [-]

Mature zma-miR156d-5p

• Accession: MIMAT0001351
• Description: Zea mays zma-miR156d-5p mature miRNA
• Sequence: 16 - UGACAGAAGAGAGUGAGCAC - 35
• Evidence: experimental ; Illumina [2]

Mature zma-miR156d-3p

• Accession: MIMAT0015124
• Description: Zea mays zma-miR156d-3p mature miRNA
• Sequence: 80 - GCUCACUUCUCUUUCUGUCAGC - 101
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716