miRBase entry: zma-MIR168b

Stem-loop zma-MIR168b


Accession
MI0001825
Description
Zea mays zma-MIR168b precursor miRNA

Literature search
30 open access papers mention zma-MIR168b
(142 sentences)

Sequence

66045 reads, 151163 reads per million, 152 experiments
uccgccgcgccgucucgggcUCGCUUGGUGCAGAUCGGGACccgccgcccggccgacgggacggauCCCGCCUUGCAUCAAGUGAAucggagccggcgcagcga
..(((.((((((.(((.((.(((((((((((((..(((((.(((...((((.....)))).))).)))))..))))))))))))).)).))).)))))).))).

Structure
uc   c      u   g  c             AU     C   ccg    g 
  cgc gcgccg cuc gg UCGCUUGGUGCAG  CGGGA ccg   cccg c
  ||| |||||| ||| || |||||||||||||  ||||| |||   |||| c
  gcg cgcggc gag cu AGUGAACUACGUU  GCCCu ggc   gggc g
-a   a      c   g  A             CC     a   --a    a 


Annotation confidence High
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Genome context
chr4: 244520636-244520739 [-]

Database links

Mature zma-miR168b-5p

Accession MIMAT0001727
Description Zea mays zma-miR168b-5p mature miRNA
Sequence 21 - UCGCUUGGUGCAGAUCGGGAC - 41
Evidence experimental
Illumina [2]
Database links

Mature zma-miR168b-3p

Accession MIMAT0015192
Description Zea mays zma-miR168b-3p mature miRNA
Sequence 67 - CCCGCCUUGCAUCAAGUGAA - 86
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13