Comments or questions? Email
mirbase@manchester.ac.uk
Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type |
|
|---|---|
| PubMed ID | 20398412 |
| Authors | Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X |
| Journal | BMC Genomics |
| Volume | 11 |
| Pages | 246 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| csi-MIR160a | MI0013294 | None | chr7 | 28083438 | 28083580 | - | - |
| csi-MIR164a | MI0013295 | None | chr6 | 11293723 | 11293961 | + | - |
| csi-MIR166e | MI0013296 | None | JH999119.1 | 2541222 | 2541398 | + | - |
| csi-MIR172a | MI0013302 | None | chr1 | 27309962 | 27310123 | - | - |
| csi-MIR162 | MI0013314 | None | JH999183.1 | 24505 | 24704 | + | - |
| csi-MIR166b | MI0013316 | None | None | None | - | ||
| csi-MIR390a | MI0013317 | None | chr6 | 11038360 | 11038515 | + | - |
| csi-MIR156a | MI0016691 | None | chr4 | 392462 | 392564 | + | - |
| csi-MIR3946 | MI0016692 | None | chr8 | 625035 | 625186 | - | - |
| csi-MIR159a | MI0016693 | None | chr5 | 31258923 | 31259134 | - | - |
| csi-MIR166c | MI0016694 | None | chr5 | 32146390 | 32146527 | + | - |
| csi-MIR166d | MI0016695 | None | None | None | - | ||
| csi-MIR167c | MI0016696 | None | chr2 | 8234791 | 8235131 | + | - |
| csi-MIR167b | MI0016697 | None | chr9 | 4850348 | 4850470 | + | - |
| csi-MIR171b | MI0016698 | None | JH999127.1 | 105690 | 105857 | + | - |
| csi-MIR171a | MI0016699 | None | chr2 | 18395485 | 18395580 | + | - |
| csi-MIR172b | MI0016700 | None | None | None | - | ||
| csi-MIR172c | MI0016701 | None | chr7 | 31488799 | 31488961 | + | - |
| csi-MIR159d | MI0016702 | None | chr4 | 17295819 | 17295941 | + | - |
| csi-MIR393a | MI0016703 | None | chr2 | 28763391 | 28763535 | - | - |
| csi-MIR394a | MI0016704 | None | chr3 | 27992160 | 27992306 | + | - |
| csi-MIR395a | MI0016705 | None | chr5 | 25578967 | 25579066 | - | - |
| csi-MIR396a | MI0016706 | None | chr7 | 3041218 | 3041370 | - | - |
| csi-MIR396b | MI0016707 | None | chr4 | 3335321 | 3335454 | + | - |
| csi-MIR397 | MI0016708 | None | chr2 | 4101151 | 4101306 | - | - |
| csi-MIR399e | MI0016709 | None | None | None | - | ||
| csi-MIR399c | MI0016710 | None | chr2 | 2303898 | 2304046 | - | - |
| csi-MIR399d | MI0016711 | None | chr9 | 15383353 | 15383482 | + | - |
| csi-MIR399a | MI0016712 | None | chr2 | 2292782 | 2292936 | + | - |
| csi-MIR399b | MI0016713 | None | chr5 | 7022847 | 7023016 | - | - |
| csi-MIR403a | MI0016714 | None | JH999133.1 | 404979 | 405108 | - | - |
| csi-MIR408 | MI0016715 | None | JH999133.1 | 795393 | 795545 | - | - |
| csi-MIR482f | MI0016716 | None | chr2 | 9962813 | 9962906 | + | - |
| csi-MIR477c | MI0016717 | None | None | None | - | ||
| csi-MIR477a | MI0016718 | None | chr7 | 15360858 | 15360997 | - | - |
| csi-MIR477b | MI0016719 | None | chr7 | 9419304 | 9419441 | + | - |
| csi-MIR477c | MI0016720 | None | chr7 | 9419500 | 9419658 | + | - |
| csi-MIR479 | MI0016721 | None | None | None | - | ||
| csi-MIR482a | MI0016722 | None | chr2 | 9941395 | 9941523 | + | - |
| csi-MIR482b | MI0016723 | None | chr2 | 9932506 | 9932614 | + | - |
| csi-MIR530a | MI0016724 | None | chr8 | 18992462 | 18992582 | + | - |
| csi-MIR530b | MI0016725 | None | chr8 | 18976494 | 18976647 | - | - |
| csi-MIR535a | MI0016726 | None | chr2 | 14822032 | 14822172 | - | - |
| csi-MIR827 | MI0016727 | None | JH999145.1 | 323612 | 323711 | + | - |
| csi-MIR857 | MI0016728 | None | JH999178.1 | 74122 | 74268 | - | - |
| csi-MIR3947 | MI0016729 | None | chr3 | 21427651 | 21427813 | + | - |
| csi-MIR3948 | MI0016730 | None | chr2 | 26665733 | 26665885 | + | - |
| csi-MIR1515a | MI0016731 | None | chr1 | 22741515 | 22741688 | + | - |
| csi-MIR3949 | MI0016732 | None | chr3 | 26424434 | 26424557 | - | - |
| csi-MIR3950 | MI0016733 | None | None | None | - | ||
| csi-MIR3951a | MI0016734 | None | chr4 | 7896098 | 7896245 | - | - |
| csi-MIR396c | MI0016735 | None | chr1 | 15270024 | 15270184 | - | - |
| csi-MIR3952 | MI0016736 | None | chr8 | 16164905 | 16165067 | + | - |
| csi-MIR482c | MI0016737 | None | chr2 | 9927230 | 9927325 | + | - |
| csi-MIR3953 | MI0016738 | None | chr7 | 20081221 | 20081321 | - | - |
| csi-MIR3954 | MI0016739 | None | chr7 | 20108227 | 20108313 | - | - |
| csi-MIR167a | MI0016740 | None | chr3 | 14951537 | 14951639 | + | - |
| csi-MIR166a | MI0013315 | None | chr5 | 444262 | 444463 | - | - |
| csi-MIR156b | MI0039615 | None | chr7 | 3637037 | 3637179 | + | - |
| csi-MIR156c | MI0039616 | None | chr4 | 3430774 | 3430922 | - | - |
| csi-MIR156d | MI0039617 | None | chr2 | 10012779 | 10012879 | + | - |
| csi-MIR156e | MI0039618 | None | chr7 | 24974743 | 24974889 | - | - |
| csi-MIR156f | MI0039619 | None | chr4 | 5738174 | 5738319 | - | - |
| csi-MIR156g | MI0039620 | None | chr6 | 18413895 | 18414036 | - | - |
| csi-MIR164b | MI0039625 | None | chr5 | 34323052 | 34323202 | - | - |
| csi-MIR164c | MI0039626 | None | chr3 | 18768832 | 18768973 | + | - |
| csi-MIR166b | MI0039627 | None | chr3 | 4882349 | 4882498 | + | - |
| csi-MIR166d | MI0039628 | None | JH999146.1 | 206472 | 206599 | + | - |
| csi-MIR166f | MI0039629 | None | chr3 | 4882188 | 4882340 | + | - |
| csi-MIR166g | MI0039630 | None | chr9 | 5710567 | 5710700 | - | - |
| csi-MIR166h | MI0039631 | None | JH999128.1 | 611054 | 611179 | + | - |
| csi-MIR166i | MI0039632 | None | JH999128.1 | 611296 | 611395 | + | - |
| csi-MIR166j | MI0039633 | None | JH999128.1 | 425836 | 425968 | + | - |
| csi-MIR166k | MI0039634 | None | JH999128.1 | 426072 | 426186 | + | - |
| csi-MIR167d | MI0039635 | None | chr5 | 32492102 | 32492188 | - | - |
| csi-MIR167e | MI0039636 | None | chr5 | 32495360 | 32495526 | - | - |
| csi-MIR172b | MI0039657 | None | chr7 | 24627515 | 24627705 | + | - |
| csi-MIR172d | MI0039658 | None | chr8 | 21300353 | 21300511 | + | - |
| csi-MIR394b | MI0039662 | None | JH999157.1 | 292152 | 292253 | - | - |
| csi-MIR535b | MI0039675 | None | chr2 | 14795671 | 14795811 | - | - |
| csi-MIR535c | MI0039676 | None | chr2 | 14868303 | 14868443 | - | - |
| csi-MIR168 | MI0039699 | None | JH999176.1 | 244098 | 244274 | + | - |
| csi-MIR156h | MI0039701 | None | chr2 | 10039848 | 10039948 | + | - |
| csi-MIR156i | MI0039702 | None | chr2 | 10067141 | 10067241 | + | - |
| csi-MIR156j | MI0039703 | None | chr2 | 10333819 | 10333930 | + | - |
| csi-MIR164d | MI0039704 | None | chr5 | 34323478 | 34323628 | - | - |
| csi-MIR535d | MI0039708 | None | chr2 | 14852789 | 14852929 | - | - |
| csi-MIR535e | MI0039709 | None | chr2 | 14823918 | 14824011 | - | - |
| csi-MIR535f | MI0039710 | None | None | None | - |