Stem-loop csi-MIR408

Accession

MI0016715

Description

Citrus sinensis csi-MIR408 precursor miRNA

Literature search

3 open access papers mention csi-MIR408
(13 sentences)

Sequence

agguaauaauaacucuuuggugugugcgugagagagaggcaagaagcaagagacaaaagACGGGGAACAGGCAGAGCAUGgauggaaccauuaacagguucucuguuuuggcuccucccAUGCACUGCCUCUUCCCUGGCucucugccuuccu
............((((((.(((....))).))))))(((.(((..(((.((((.....(.(((((((.((((((.((((((..(((.(((..(((((.....))))).))).)))..)))))).)))))).))))))).))))))))))))))

Structure

agguaauaauaacucuuuggugugugcgugagagag   c   aa   a    caaaa A       C      A      au   a   uu     g 
                                    agg aag  gca gaga     g CGGGGAA AGGCAG GCAUGg  gga cca  aacag u
                                    ||| |||  ||| ||||     | ||||||| |||||| ||||||  ||| |||  ||||| u
                                    ucc uuc  cgu cucu     C GUCCCUU UCCGUC CGUAcc  ccu ggu  uuguc c
------------------------------------   -   --   -    ----- G       C      A      cu   c   -u     u 

Annotation confidence Not enough data

Genome context

JH999133.1: 795393-795545 [-]

Mature csi-miR408-3p

• Accession: MIMAT0018472
• Description: Citrus sinensis csi-miR408-3p mature miRNA
• Sequence: 120 - AUGCACUGCCUCUUCCCUGGC - 140
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR408-5p

• Accession: MIMAT0037406
• Description: Citrus sinensis csi-miR408-5p mature miRNA
• Sequence: 60 - ACGGGGAACAGGCAGAGCAUG - 80
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113