Stem-loop csi-MIR535d

Accession

MI0039708

Description

Citrus sinensis csi-MIR535d precursor miRNA

Literature search

2 open access papers mention csi-MIR535d
(5 sentences)

Sequence

auccuugcccagacucaauacaaauuugcuUGACAAUGAGAGAGAGCACACcugucagcauucgugcaaauggcaaggcugucuacuagcGUGCUCUCUACCAUUGUCAUAaaauuugcuuaaagcaguugaauauugucu
....................(((((((...((((((((..(((((((((.(..((((((.....(((.....)))..))))...))..).)))))))))..))))))))..)))))))......(((((.....)))))..

Structure

---auccuugcccagacucaaua       gcu        AG         A cu  ---    auucg   a 
                       caaauuu   UGACAAUG  AGAGAGCAC C  gu   cagc     ugc a
                       |||||||   ||||||||  ||||||||| |  ||   ||||     ||| a
                       guuuaaa   ACUGUUAC  UCUCUCGUG g  ca   gucg     acg u
ucuguuauaaguugacgaaauuc       -AU        CA         c au  ucu    ---ga   g 

Annotation confidence Low

Genome context

chr2: 14852789-14852929 [-]

Mature csi-miR535d-5p

• Accession: MIMAT0048998
• Description: Citrus sinensis csi-miR535d-5p mature miRNA
• Sequence: 31 - UGACAAUGAGAGAGAGCACAC - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR535d-3p

• Accession: MIMAT0048999
• Description: Citrus sinensis csi-miR535d-3p mature miRNA
• Sequence: 91 - GUGCUCUCUACCAUUGUCAUA - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113