Stem-loop csi-MIR166f

Accession

MI0039629

Description

Citrus sinensis csi-MIR166f precursor miRNA

Literature search

7 open access papers mention csi-MIR166f
(12 sentences)

Sequence

auggauggggaaaaaugauuguuucugaggGGACUGUUGUCUGGCUCGAUGcauuaauaauaauuauaauuauauaauuauaauuauaaugaaaaaaggguaUCGGACCAGGCUUCAUUCCCUucagaaucaaauucauuauuugaucuuuuu
..((((.(((...((((((((.(((((((((((.((..((((((.(((((((..........((((((((((((....)))))))))))).........))))))).))))))..)).))))))))))).)))..))))).))).))))....

Structure

--au    g   aaa     --   u           C  UU      C       auuaauaaua            u 
    ggau ggg   aauga  uug uucugaggGGA UG  GUCUGG UCGAUGc          auuauaauuaua a
    |||| |||   |||||  ||| ||||||||||| ||  |||||| |||||||          ||||||||||||  
    ucua uuu   uuacu  aac aagacuUCCCU AC  CGGACC GGCUaug          uaauauuaauau a
uuuu    g   --a     ua   u           U  UU      A       -ggaaaaaag            u 

Annotation confidence Not enough data

Genome context

chr3: 4882188-4882340 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR166f

Mature csi-miR166f-5p

• Accession: MIMAT0048876
• Description: Citrus sinensis csi-miR166f-5p mature miRNA
• Sequence: 31 - GGACUGUUGUCUGGCUCGAUG - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR166f-3p

• Accession: MIMAT0048877
• Description: Citrus sinensis csi-miR166f-3p mature miRNA
• Sequence: 103 - UCGGACCAGGCUUCAUUCCCU - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113