Stem-loop csi-MIR403a

Accession

MI0016714

Description

Citrus sinensis csi-MIR403a precursor miRNA

Sequence

gaggCAUGUUUCGGGUUUGUGCGUGaauuuaauaaaauaaccgcuucuuuuaaucucguucccccauuuuuuguuaguaacaaauuuuugccgucagugUUAGAUUCACGCACAAACUCGugacgugucu
.(((((((((.(((((((((((((((((((((((.....((.((.........................((((((...)))))).....)).))...))))))))))))))))))))))).)))))))))

Structure

g         U                       aaaua  c  uucuuuuaaucucguucccccauuu      a 
 aggCAUGUU CGGGUUUGUGCGUGaauuuaaua     ac gc                         uuuguu  
 ||||||||| |||||||||||||||||||||||     || ||                         |||||| g
 ucugugcag GCUCAAACACGCACUUAGAUUgu     ug cg                         aaacaa  
-         u                       --gac  c  --------------------uuuuu      u 

Annotation confidence Not enough data

Genome context

JH999133.1: 404979-405108 [-]

Mature csi-miR403a-3p

• Accession: MIMAT0018471
• Description: Citrus sinensis csi-miR403a-3p mature miRNA
• Sequence: 100 - UUAGAUUCACGCACAAACUCG - 120
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR403a-5p

• Accession: MIMAT0037405
• Description: Citrus sinensis csi-miR403a-5p mature miRNA
• Sequence: 5 - CAUGUUUCGGGUUUGUGCGUG - 25
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113