Stem-loop csi-MIR167e

Accession

MI0039636

Description

Citrus sinensis csi-MIR167e precursor miRNA

Literature search

4 open access papers mention csi-MIR167e
(5 sentences)

Sequence

ugcacacaagcagucuacaaggggaaaaagUGAAGCUGCCAGCAUGAUCUAucuagcgcauuugguuagugaaaguaauaaauaaagaagcaaguacgauacuaacccuagcuaGGUCAUGCUCUGACAGCCUCACUccuuccuacuugcggacccauuuaauucaa
(((......)))((((.(((((((((..(((((.(((((.(((((((((((.((((.......((((((((...(((.................)))..)))))))))))).)))))))))))..).)))).)))))..))))).)))).)))).............

Structure

-ugcacacaagca    a    -     aa     A    - -C           u    cgcauuu        aaa   auaaaua 
             gucu caag gggaa  agUGA GCUG C  AGCAUGAUCUA cuag       gguuagug   gua       a
             |||| |||| |||||  ||||| |||| |  ||||||||||| ||||       ||||||||   |||       a
             cagg guuc uccuu  UCACU CGAC G  UCGUACUGGau gauc       ccaaucau   cau       g
aacuuaauuuacc    c    a     cc     C    A UC           c    -------        -ag   gaacgaa 

Annotation confidence Not enough data

Genome context

chr5: 32495360-32495526 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR167e

Mature csi-miR167e-5p

• Accession: MIMAT0048886
• Description: Citrus sinensis csi-miR167e-5p mature miRNA
• Sequence: 31 - UGAAGCUGCCAGCAUGAUCUA - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR167e-3p

• Accession: MIMAT0048887
• Description: Citrus sinensis csi-miR167e-3p mature miRNA
• Sequence: 115 - GGUCAUGCUCUGACAGCCUCACU - 137
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113