Stem-loop csi-MIR3952

Accession

MI0016736

Description

Citrus sinensis csi-MIR3952 precursor miRNA

Sequence

uauucuuucauguGCUGUAGAUAGGCCCUUCAACcucggaaaccucaccauggacugggagcgaaggaagugggaucugaugguuggcauuguagguggcaagcugcaaaagaaagaugacguuuucaaaguUGAAGGGCCUUUCUAGAGCACuggaauccau
.....(((((.(((((.((((.((((((((((((...((((((.(((((((...((........))...))))((((....))))....((((((.(....).))))))........))).))))))...)))))))))))).)))).)))))))))).....

Structure

uauuc     u     G    U            cuc      c   ccauggacugggagcgaaggaagugggaucugaugguuggca      g g 
     uuuca guGCU UAGA AGGCCCUUCAAC   ggaaac uca                                          uuguag u g
     ||||| ||||| |||| ||||||||||||   |||||| |||                                          |||||| |  
     aaggu CACGA AUCU UCCGGGAAGUug   cuuuug agu                                          aacguc a c
uaccu     -     G    U            aaa      c   ----------------------------------agaaagaa      g a 

Annotation confidence Not enough data

Genome context

chr8: 16164905-16165067 [+]

Mature csi-miR3952-3p

• Accession: MIMAT0018494
• Description: Citrus sinensis csi-miR3952-3p mature miRNA
• Sequence: 133 - UGAAGGGCCUUUCUAGAGCAC - 153
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR3952-5p

• Accession: MIMAT0037415
• Description: Citrus sinensis csi-miR3952-5p mature miRNA
• Sequence: 14 - GCUGUAGAUAGGCCCUUCAAC - 34
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113