Stem-loop csi-MIR397

Accession

MI0016708

Description

Citrus sinensis csi-MIR397 precursor miRNA

Literature search

5 open access papers mention csi-MIR397
(10 sentences)

Sequence

ccagauugaaaaaaacaUCAUUGAGUGCAGCGUUGAUGaauauuugucggugcuuugccaauauuucucuauacuagccaggauucuuucACCAGCGCUGCACUCGAUCAUguuuuuuagcucugcugguucaggauuauccagauaauacgcaca
.((((....(((((((((.((((((((((((((((.((((.....(((...(((.....................)))...)))...)))).)))))))))))))))).)))))))))...))))((((...........))))............

Structure

------------------------------c    uuga         C                A    uauuu   ggu   uugccaaua 
                               caga    aaaaaacaU AUUGAGUGCAGCGUUG UGaa     guc   gcu         u
                               ||||    ||||||||| |||||||||||||||| ||||     |||   |||         u
                               gucu    uuuuuugUA UAGCUCACGUCGCGAC Acuu     uag   cga         u
acacgcauaauagaccuauuaggacuugguc    -cga         C                C    --ucu   gac   ucauaucuc 

Annotation confidence Not enough data

Genome context

chr2: 4101151-4101306 [-]

Mature csi-miR397-5p

• Accession: MIMAT0018465
• Description: Citrus sinensis csi-miR397-5p mature miRNA
• Sequence: 18 - UCAUUGAGUGCAGCGUUGAUG - 38
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR397-3p

• Accession: MIMAT0037400
• Description: Citrus sinensis csi-miR397-3p mature miRNA
• Sequence: 91 - ACCAGCGCUGCACUCGAUCAU - 111
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113