Stem-loop csi-MIR172b

Accession

MI0039657

Description

Citrus sinensis csi-MIR172b precursor miRNA

Literature search

5 open access papers mention csi-MIR172b
(15 sentences)

Sequence

augaugaacaaacagucaucguuugcagauGCAGCAUCAUCAAGAUUCACAuguauauauauauauauauauauauauauagauauagauauaugcuaaugguggaaagauguuuaucuuuuugcuuuauugccuucaugAGAAUCUUGAUGAUGCUGCAUcagcgauaaaugacuaaucauauauaucua
.............((((((...((((.(((((((((((((((((((((.((((((((((((((((....)))))))))))).............((....(((((((((((....))))))))))).....))...)))).))))))))))))))))))))).))))...))))))...............

Structure

--augaugaacaaac      cgu    a                     A    uauauauauauauauauauauauauauagauauagauauau  -uaau           g 
               agucau   uugc gauGCAGCAUCAUCAAGAUUC CAug                                         gc     gguggaaagau u
               ||||||   |||| ||||||||||||||||||||| ||||                                         ||     |||||||||||  
               ucagua   agcg cUACGUCGUAGUAGUUCUAAG guac                                         cg     ucguuuuucua u
aucuauauauacuaa      aau    a                     A    --------------------------------------uuc  uuauu           u 

Annotation confidence Low

Genome context

chr7: 24627515-24627705 [+]

Mature csi-miR172b-5p

• Accession: MIMAT0048915
• Description: Citrus sinensis csi-miR172b-5p mature miRNA
• Sequence: 31 - GCAGCAUCAUCAAGAUUCACA - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR172b-3p

• Accession: MIMAT0048916
• Description: Citrus sinensis csi-miR172b-3p mature miRNA
• Sequence: 141 - AGAAUCUUGAUGAUGCUGCAU - 161
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113