Stem-loop csi-MIR395a

Accession

MI0016705

Description

Citrus sinensis csi-MIR395a precursor miRNA

Literature search

4 open access papers mention csi-MIR395a
(31 sentences)

Sequence

ugucuccgggaguuccuccgaucacuucauuggggcuauaugaucauuuagagaaaauuugucaccccaCUGAAGUGUUUGGGGGAACUCugggugccac
((.(.((.(((((((((((((.(((((((.(((((.....((((.((((.....))))..))))))))).))))))).))))))))))))).)).).)).

Structure

-  u u  g             u       u     cuaua    -c    a 
 ug c cc ggaguuccuccga cacuuca ugggg     ugau  auuu g
 || | || ||||||||||||| ||||||| |||||     ||||  |||| a
 ac g gg uCUCAAGGGGGUU GUGAAGU acccc     acug  uaaa g
c  c u  g             U       C     -----    uu    a 

Annotation confidence Not enough data

Genome context

chr5: 25578967-25579066 [-]

Mature csi-miR395a

• Accession: MIMAT0018462
• Description: Citrus sinensis csi-miR395a mature miRNA
• Sequence: 70 - CUGAAGUGUUUGGGGGAACUC - 90
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113