Browse miRBase by species (271 organisms)
Click taxa to expand and collapse the tree. Click species names to list microRNAs.
Jump to: human, mouse, rat, fly, worm, Arabidopsis.
Key: species name (miRNA count) [assembly version]
- Alveolata
- Symbiodinium microadriaticum (8 precursors, 15 mature) [ASM193914v1]
- Chromalveolata
- Heterokontophyta
- Ectocarpus siliculosus (49 precursors, 77 mature) [EctsiV2]
- Phytophthora infestans (1 precursors, 2 mature)
- Phytophthora ramorum (2 precursors, 4 mature)
- Phytophthora sojae (2 precursors, 4 mature)
- Phaeodactylum tricornutum (13 precursors, 13 mature) [ASM15095v2]
- Metazoa
- Bilateria
- Deuterostoma
- Xenoturbella bocki (8 precursors, 8 mature)
- Chordata
- Cephalochordata
- Branchiostoma belcheri (118 precursors, 173 mature)
- Branchiostoma floridae (156 precursors, 185 mature) [JGI2]
- Urochordata
- Ciona intestinalis (348 precursors, 548 mature) [JGI2]
- Ciona savignyi (27 precursors, 25 mature) [CSAV2.0]
- Oikopleura dioica (66 precursors, 63 mature)
- Vertebrata
- Agnathostomata
- Petromyzon marinus (244 precursors, 302 mature) [Petromyzon_marinus-7.0]
- Amphibia
- Xenopus laevis (148 precursors, 247 mature) [JGIv8.0]
- Xenopus tropicalis (196 precursors, 182 mature) [Xenopus_tropicalis_v9.1]
- Aves
- Anas platyrhynchos (4 precursors, 8 mature) [BGI_duck_1.0]
- Columba livia (248 precursors, 420 mature) [CLiv1.0]
- Gallus gallus (882 precursors, 1232 mature) [Gallus_gallus-5.0]
- Taeniopygia guttata (247 precursors, 334 mature) [taeGlu3.2.4]
- Mammalia
- Carnivora
- Canis familiaris (502 precursors, 453 mature) [CanFam3.1]
- Cingulata
- Dasypus novemcinctus (319 precursors, 602 mature) [dasNov3.0]
- Lagomorpha
- Oryctolagus cuniculus (306 precursors, 579 mature) [OryCun2.0]
- Laurasiatheria
- Artibeus jamaicensis (19 precursors, 19 mature)
- Equus caballus (715 precursors, 690 mature) [EquCab2.0]
- Eptesicus fuscus (494 precursors, 426 mature) [EptFus1.0]
- Pteropus alecto (345 precursors, 651 mature) [ASM32557v1]
- Metatheria
- Monodelphis domestica (680 precursors, 1138 mature) [MonDom5]
- Macropus eugenii (3 precursors, 3 mature)
- Sarcophilus harrisii (64 precursors, 62 mature) [DEVIL7_0]
- Primates
- Atelidae
- Ateles geoffroyi (60 precursors, 54 mature)
- Lagothrix lagotricha (48 precursors, 45 mature)
- Cebidae
- Callithrix jacchus (509 precursors, 470 mature) [Callithrix_jacchus-3.2]
- Saimiri boliviensis (44 precursors, 36 mature) [SaiBol1.0]
- Saguinus labiatus (42 precursors, 40 mature)
- Cercopithecidae
- Macaca mulatta (617 precursors, 912 mature) [Mmul_8.0.1]
- Macaca nemestrina (74 precursors, 70 mature)
- Pygathrix bieti (11 precursors, 9 mature)
- Papio hamadryas (102 precursors, 86 mature)
- Cheirogaleidae
- Microcebus murinus (125 precursors, 109 mature) [Mmur_3.0]
- Daubentoniidae
- Daubentonia madagascariensis (75 precursors, 67 mature) [DauMad_1.0]
- Galagidae
- Otolemur garnettii (140 precursors, 127 mature) [OtoGar3]
- Hominidae
- Gorilla gorilla (364 precursors, 369 mature) [GorGor4]
- Homo sapiens (1917 precursors, 2654 mature) [GRCh38]
- Pan paniscus (166 precursors, 157 mature) [panpan1.1]
- Pongo pygmaeus (621 precursors, 645 mature) [P_pygmaeus_2.0.2]
- Pan troglodytes (655 precursors, 587 mature) [Pan_tro3.0]
- Symphalangus syndactylus (11 precursors, 10 mature)
- Hylobatidae
- Nomascus leucogenys (156 precursors, 135 mature) [Nleu_3.0]
- Lemuridae
- Lemur catta (16 precursors, 15 mature)
- Prototheria
- Ornithorhynchus anatinus (396 precursors, 640 mature) [OANA5]
- Rodentia
- Cricetulus griseus (245 precursors, 351 mature) [CriGri_1.0]
- Cavia porcellus (346 precursors, 656 mature) [cavPor3]
- Mus musculus (1234 precursors, 1978 mature) [GRCm38]
- Rattus norvegicus (496 precursors, 764 mature) [Rnor_6.0]
- Ruminantia
- Bos taurus (1064 precursors, 1025 mature) [Btau_5.0.1]
- Capra hircus (267 precursors, 436 mature) [CHIR_2.0]
- Ovis aries (106 precursors, 153 mature) [Oar_v4.0]
- Scandentia
- Tupaia chinensis (177 precursors, 162 mature) [TupChi_1.0]
- Suina
- Sus scrofa (408 precursors, 457 mature) [Sscrofa10.2]
- Sauria
- Anolis carolinensis (303 precursors, 449 mature) [AnoCar2.0]
- Alligator mississippiensis (242 precursors, 373 mature) [ASM28112v4]
- Chrysemys picta (268 precursors, 405 mature) [Chrysemys_picta_bellii-3.0.3]
- Ophiophagus hannah (198 precursors, 343 mature) [OphHan1.0]
- Python bivittatus (212 precursors, 307 mature) [Python_molurus_bivittatus-5.0.2]
- Teleostei
- Astatotilapia burtoni (298 precursors, 236 mature) [AstBur1.0]
- Cyprinus carpio (134 precursors, 146 mature)
- Danio rerio (355 precursors, 373 mature) [GRCz11]
- Electrophorus electricus (20 precursors, 34 mature) [MSU_v1.0]
- Fugu rubripes (131 precursors, 108 mature) [FUGU5]
- Gadus morhua (401 precursors, 516 mature) [GadMor_May2010]
- Hippoglossus hippoglossus (39 precursors, 36 mature)
- Ictalurus punctatus (281 precursors, 205 mature)
- Metriaclima zebra (256 precursors, 184 mature) [M_zebra_UMD1]
- Neolamprologus brichardi (251 precursors, 182 mature) [NeoBri1.0]
- Oryzias latipes (168 precursors, 146 mature) [MEDAKA1]
- Oreochromis niloticus (812 precursors, 695 mature)
- Pundamilia nyererei (250 precursors, 182 mature) [PunNye1.0]
- Paralichthys olivaceus (20 precursors, 38 mature)
- Salmo salar (371 precursors, 497 mature)
- Tetraodon nigroviridis (132 precursors, 109 mature) [Tetraodon8]
- Echinodermata
- Lytechinus variegatus (50 precursors, 49 mature)
- Patiria miniata (49 precursors, 50 mature)
- Strongylocentrotus purpuratus (63 precursors, 70 mature) [Spur_4.2]
- Hemichordata
- Saccoglossus kowalevskii (89 precursors, 114 mature) [Skow_1.1]
- Ecdysozoa
- Arthropoda
- Chelicerata
- Ixodes scapularis (49 precursors, 49 mature) [Iscaw1]
- Parasteatoda tepidariorum (148 precursors, 257 mature)
- Rhipicephalus microplus (24 precursors, 24 mature)
- Tetranychus urticae (52 precursors, 92 mature)
- Crustacea
- Daphnia pulex (44 precursors, 44 mature) [V1.0]
- Marsupenaeus japonicus (5 precursors, 7 mature)
- Triops cancriformis (148 precursors, 160 mature)
- Hexapoda
- Aedes aegypti (155 precursors, 164 mature) [AaegL1]
- Anopheles gambiae (130 precursors, 163 mature) [AgamP3]
- Apis mellifera (254 precursors, 262 mature) [AMEL4.5]
- Acyrthosiphon pisum (123 precursors, 97 mature) [Acyr_2.0]
- Bactrocera dorsalis (80 precursors, 78 mature) [ASM78921v2]
- Biston betularia (2 precursors, 2 mature)
- Bombyx mori (487 precursors, 563 mature) [ASM15162v1]
- Culex quinquefasciatus (74 precursors, 91 mature) [CpipJ1]
- Drosophila ananassae (76 precursors, 75 mature) [dana_r1.3_FB2010_03]
- Drosophila erecta (101 precursors, 120 mature) [dere_r1.3_FB2010_02]
- Drosophila grimshawi (82 precursors, 72 mature) [dgri_r1.3_FB2010_02]
- Drosophila melanogaster (258 precursors, 469 mature) [Release_6]
- Drosophila mojavensis (71 precursors, 71 mature) [dmoj_r1.3_FB2010_02]
- Drosophila persimilis (75 precursors, 69 mature) [dper_r1.3_FB2010_02]
- Drosophila pseudoobscura (210 precursors, 271 mature) [dpse_r2.26_FB2012_01]
- Dinoponera quadriceps (102 precursors, 197 mature)
- Drosophila sechellia (103 precursors, 120 mature) [dsec_r1.3_FB2010_02]
- Drosophila simulans (148 precursors, 213 mature) [dsim_caf1]
- Drosophila virilis (180 precursors, 328 mature) [DroVir3]
- Drosophila willistoni (77 precursors, 72 mature) [dwil_r1.3_FB2010_02]
- Drosophila yakuba (89 precursors, 103 mature) [dyak_caf1]
- Heliconius melpomene (92 precursors, 97 mature) [HelMel1.1]
- Locusta migratoria (7 precursors, 14 mature)
- Manduca sexta (98 precursors, 93 mature) [Msex1.0]
- Nasonia giraulti (32 precursors, 32 mature)
- Nasonia longicornis (28 precursors, 28 mature)
- Nasonia vitripennis (53 precursors, 53 mature) [Nvit_2.1]
- Polistes canadensis (73 precursors, 140 mature)
- Plutella xylostella (133 precursors, 127 mature) [1.0]
- Spodoptera frugiperda (122 precursors, 221 mature) [ASM75363v2]
- Tribolium castaneum (342 precursors, 590 mature) [Tcas4.0]
- Mandibulata
- Strigamia maritima (3 precursors, 4 mature)
- Nematoda
- Ascaris suum (97 precursors, 189 mature)
- Brugia malayi (157 precursors, 166 mature) [PRJNA10729_WB240]
- Caenorhabditis brenneri (214 precursors, 152 mature) [C_brenneri-6.0.1b]
- Caenorhabditis briggsae (175 precursors, 163 mature) [CB4]
- Caenorhabditis elegans (253 precursors, 437 mature) [WBcel235]
- Caenorhabditis remanei (157 precursors, 182 mature) [WS200]
- Haemonchus contortus (188 precursors, 194 mature)
- Heligmosomoides polygyrus (246 precursors, 486 mature) [nHp_1_0]
- Pristionchus pacificus (354 precursors, 550 mature) [El_Paco]
- Panagrellus redivivus (200 precursors, 394 mature) [Pred3]
- Strongyloides ratti (106 precursors, 208 mature) [WTSIv4]
- Lophotrochozoa
- Annelida
- Capitella teleta (129 precursors, 134 mature) [Capca1]
- Brachiopoda
- Glottidia pyramidata (1 precursors, 1 mature)
- Terebratulina retusa (1 precursors, 1 mature)
- Mollusca
- Haliotis rufescens (5 precursors, 5 mature)
- Lottia gigantea (59 precursors, 64 mature) [Helro1]
- Melibe leonina (90 precursors, 176 mature)
- Nemertea
- Cerebratulus lacteus (2 precursors, 2 mature)
- Platyhelminthes
- Echinococcus granulosus (111 precursors, 218 mature) [ASM52419v1]
- Echinococcus multilocularis (36 precursors, 68 mature) [WTSI3]
- Fasciola hepatica (38 precursors, 38 mature) [Fhepatica_v1]
- Gyrodactylus salaris (60 precursors, 120 mature)
- Mesocestoides corti (42 precursors, 45 mature) [M_corti_Specht_Voge]
- Schistosoma japonicum (56 precursors, 79 mature) [ASM15177v1]
- Schistosoma mansoni (115 precursors, 225 mature) [WTSI5]
- Schmidtea mediterranea (148 precursors, 257 mature) [WUSTL3.1]
- Cnidaria
- Hydra magnipapillata (17 precursors, 20 mature)
- Nematostella vectensis (141 precursors, 140 mature) [JGI1.0]
- Porifera
- Amphimedon queenslandica (8 precursors, 16 mature)
- Leucosolenia complicata (1 precursors, 1 mature)
- Sycon ciliatum (1 precursors, 2 mature)
- Mycetozoa
- Dictyostelium discoideum (17 precursors, 20 mature) [DictyBase2009]
- Viridiplantae
- Chlorophyta
- Chlamydomonas reinhardtii (50 precursors, 86 mature) [CHLRE3.1]
- Coniferophyta
- Cunninghamia lanceolata (4 precursors, 4 mature)
- Picea abies (594 precursors, 600 mature)
- Pinus densata (29 precursors, 29 mature)
- Pinus taeda (35 precursors, 36 mature)
- Embryophyta
- Physcomitrella patens (247 precursors, 298 mature) [v3.0]
- Selaginella moellendorffii (58 precursors, 64 mature)
- Magnoliophyta
- Amborella trichopoda (124 precursors, 129 mature) [AmTr_v1.0]
- eudicotyledons
- Amaranthaceae
- Salicornia europaea (31 precursors, 31 mature)
- Araliaceae
- Panax ginseng (29 precursors, 32 mature)
- Asteraceae
- Cynara cardunculus (48 precursors, 57 mature)
- Helianthus annuus (6 precursors, 7 mature)
- Helianthus argophyllus (3 precursors, 3 mature)
- Helianthus ciliaris (3 precursors, 3 mature)
- Helianthus exilis (2 precursors, 2 mature)
- Helianthus paradoxus (3 precursors, 3 mature)
- Helianthus petiolaris (3 precursors, 3 mature)
- Helianthus tuberosus (16 precursors, 16 mature)
- Brassicaceae
- Arabidopsis lyrata (205 precursors, 384 mature) [v1.0]
- Arabidopsis thaliana (326 precursors, 428 mature) [TAIR10]
- Brassica napus (90 precursors, 92 mature) [BrassicaDB-20080411]
- Brassica oleracea (10 precursors, 11 mature)
- Brassica rapa (96 precursors, 157 mature) [Brapa_1.1]
- Camelina sativa (91 precursors, 112 mature) [Cs]
- Caricaceae
- Carica papaya (79 precursors, 81 mature)
- Cucurbitaceae
- Cucumis melo (120 precursors, 120 mature)
- Cucumis sativus (5 precursors, 5 mature) [ASM407v2]
- Euphorbiaceae
- Hevea brasiliensis (30 precursors, 30 mature) [Hevbra_1.0]
- Manihot esculenta (174 precursors, 175 mature) [Cassava4]
- Ricinus communis (63 precursors, 63 mature) [JCVI_RCG_1.1]
- Fabaceae
- Acacia auriculiformis (7 precursors, 7 mature)
- Arachis hypogaea (23 precursors, 32 mature)
- Acacia mangium (3 precursors, 3 mature)
- Glycine max (684 precursors, 756 mature) [Glycine_max_v2.0]
- Glycine soja (13 precursors, 13 mature)
- Lotus japonicus (299 precursors, 365 mature) [lj2.5]
- Medicago truncatula (672 precursors, 756 mature) [JCVI_Mt3.5.2]
- Phaseolus vulgaris (8 precursors, 10 mature) [PhaVulg1_0]
- Vigna unguiculata (18 precursors, 18 mature)
- Lamiales
- Avicennia marina (2 precursors, 3 mature)
- Digitalis purpurea (13 precursors, 13 mature)
- Rehmannia glutinosa (32 precursors, 37 mature)
- Salvia miltiorrhiza (1 precursors, 1 mature)
- Salvia sclarea (18 precursors, 18 mature)
- Linaceae
- Linum usitatissimum (124 precursors, 124 mature)
- Malvaceae
- Gossypium arboreum (1 precursors, 1 mature)
- Gossypium herbaceum (1 precursors, 1 mature)
- Gossypium hirsutum (78 precursors, 80 mature)
- Gossypium raimondii (296 precursors, 296 mature) [Graimondii2_0]
- Theobroma cacao (82 precursors, 82 mature)
- Myrtaceae
- Eugenia uniflora (39 precursors, 74 mature)
- Paeoniaceae
- Paeonia lactiflora (15 precursors, 15 mature)
- Ranunculaceae
- Aquilegia caerulea (45 precursors, 45 mature)
- Rhizophoraceae
- Bruguiera cylindrica (4 precursors, 4 mature)
- Bruguiera gymnorhiza (4 precursors, 4 mature)
- Rosaceae
- Fragaria vesca (118 precursors, 131 mature) [v1.1]
- Malus domestica (308 precursors, 322 mature)
- Prunus persica (180 precursors, 214 mature) [Prunus_persica_NCBIv2]
- Rutaceae
- Citrus clementina (5 precursors, 5 mature)
- Citrus reticulata (4 precursors, 4 mature)
- Citrus sinensis (151 precursors, 246 mature) [Csi_valencia_1.0]
- Citrus trifoliata (6 precursors, 6 mature)
- Salicaceae
- Populus euphratica (4 precursors, 4 mature)
- Populus trichocarpa (352 precursors, 401 mature) [Poptr2_0]
- Solanaceae
- Nicotiana tabacum (162 precursors, 164 mature)
- Solanum lycopersicum (112 precursors, 147 mature) [SL2.50]
- Solanum tuberosum (224 precursors, 343 mature) [SolTub3.0]
- Vitaceae
- Vitis vinifera (163 precursors, 186 mature) [12X]
- monocotyledons
- Asparagus officinalis (101 precursors, 101 mature) [Aspof.V1]
- Aegilops tauschii (88 precursors, 173 mature) [ASM34733v2]
- Brachypodium distachyon (317 precursors, 525 mature) [Bd21]
- Elaeis guineensis (6 precursors, 6 mature)
- Festuca arundinacea (15 precursors, 15 mature)
- Hordeum vulgare (69 precursors, 71 mature) [Hvul_cvHarunaNijo3HBAC01]
- Oryza sativa (604 precursors, 738 mature) [MSU7]
- Sorghum bicolor (205 precursors, 241 mature) [Sorghum_bicolor_NCBIv3]
- Saccharum officinarum (16 precursors, 16 mature)
- Saccharum sp. (19 precursors, 20 mature)
- Triticum aestivum (122 precursors, 125 mature)
- Triticum turgidum (1 precursors, 1 mature)
- Vriesea carinata (33 precursors, 65 mature)
- Zea mays (174 precursors, 325 mature) [B73_RefGen_v4]
- Viruses
- Bovine foamy virus (2 precursors, 4 mature)
- Bovine herpesvirus 1 (10 precursors, 12 mature)
- Bovine herpesvirus 5 (5 precursors, 5 mature)
- BK polyomavirus (1 precursors, 2 mature)
- Bovine leukemia virus (5 precursors, 10 mature) [K02120.1]
- Bandicoot papillomatosis carcinomatosis virus type 1 (1 precursors, 1 mature)
- Bandicoot papillomatosis carcinomatosis virus type 2 (1 precursors, 1 mature)
- Duck enteritis virus (24 precursors, 33 mature)
- Epstein Barr virus (25 precursors, 44 mature) [EMBL:AJ507799.2]
- Gorilla gorilla gorilla polyomavirus 1 (1 precursors, 2 mature)
- Herpes B virus (12 precursors, 15 mature) [Refseq:NC_004812]
- Human cytomegalovirus (15 precursors, 26 mature) [EMBL:X17403.1]
- Human herpesvirus 6B (4 precursors, 8 mature)
- Human immunodeficiency virus 1 (3 precursors, 4 mature)
- Herpes Simplex Virus 1 (18 precursors, 27 mature)
- Herpes Simplex Virus 2 (18 precursors, 24 mature)
- Herpesvirus saimiri strain A11 (3 precursors, 6 mature)
- Herpesvirus of turkeys (17 precursors, 28 mature)
- Infectious laryngotracheitis virus (7 precursors, 10 mature)
- JC polyomavirus (1 precursors, 2 mature)
- Kaposi sarcoma-associated herpesvirus (13 precursors, 25 mature) [EMBL:U75698.1]
- Mouse cytomegalovirus (18 precursors, 29 mature)
- Merkel cell polyomavirus (1 precursors, 2 mature)
- Mareks disease virus type 1 (14 precursors, 26 mature) [EMBL:AF243438.1]
- Mareks disease virus type 2 (18 precursors, 36 mature)
- Mouse gammaherpesvirus 68 (15 precursors, 28 mature) [EMBL:U97553.1]
- Pseudorabies virus (14 precursors, 18 mature) [NC_006151.1]
- Pan troglodytes verus polyomavirus 2a (1 precursors, 2 mature)
- Raccoon polyomavirus (1 precursors, 2 mature)
- Rhesus lymphocryptovirus (36 precursors, 70 mature)
- Rhesus monkey rhadinovirus (7 precursors, 11 mature) [EMBL:AF210726.1]
- Simian foamy virus (7 precursors, 13 mature)
- Simian virus 40 (1 precursors, 2 mature)
- Torque teno virus (1 precursors, 2 mature)