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Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development |
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|---|---|
| PubMed ID | 20089182 |
| Authors | Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R |
| Journal | BMC Genomics |
| Volume | 11 |
| Pages | 52 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| bmo-mir-2733b-1 | MI0012190 | 1 | NW_004581684.1 | 346939 | 347018 | - | - |
| bmo-mir-2733e-1 | MI0012304 | 4 | NW_004581684.1 | 342896 | 342993 | - | - |
| bmo-mir-2733d | MI0012305 | 3 | None | None | - | ||
| bmo-mir-2763 | MI0012317 | 4 | NW_004581731.1 | 1485728 | 1485812 | + | - |
| bmo-mir-2766 | MI0012320 | 14775 | NW_004581756.1 | 163308 | 163380 | - | High |
| bmo-mir-375 | MI0012324 | 3683 | NW_004581700.1 | 2059423 | 2059501 | + | High |
| bmo-mir-2998 | MI0013854 | 159 | NW_004581712.1 | 4762 | 4856 | + | - |
| bmo-mir-2999 | MI0013855 | 71 | NW_004581688.1 | 951610 | 951720 | + | - |
| bmo-mir-2733f | MI0013856 | 1 | NW_004581684.1 | 346080 | 346197 | - | - |
| bmo-mir-2733g | MI0013857 | 1 | NW_004581684.1 | 347847 | 347958 | - | - |
| bmo-mir-2733a-2 | MI0013858 | 1 | NW_004581684.1 | 346489 | 346605 | - | - |
| bmo-mir-2733h | MI0013859 | 1 | NW_004581684.1 | 347062 | 347142 | - | - |
| bmo-mir-3000 | MI0013860 | 48 | NW_004581745.1 | 994719 | 994839 | - | - |
| bmo-mir-3001 | MI0013861 | 64 | NW_004581686.1 | 3139673 | 3139791 | - | - |
| bmo-mir-2733e-3 | MI0015937 | 4 | None | None | - | ||
| bmo-let-7 | MI0004968 | 17656 | NW_004582019.1 | 3373685 | 3373788 | - | High |
| bmo-mir-1a | MI0004969 | 148495 | NW_004582020.1 | 5628055 | 5628139 | - | - |
| bmo-mir-8 | MI0004971 | 4919 | NW_004582017.1 | 79866 | 79967 | + | High |
| bmo-mir-9a | MI0004972 | 415 | NW_004582229.1 | 9274 | 9363 | - | High |
| bmo-mir-10 | MI0004973 | 1726 | NW_004582018.1 | 2516858 | 2516941 | - | High |
| bmo-mir-14 | MI0004974 | 446 | NW_004582033.1 | 1273977 | 1274056 | - | High |
| bmo-mir-34 | MI0004975 | 267 | NW_004581681.1 | 3813355 | 3813452 | - | High |
| bmo-mir-124 | MI0004976 | None | NW_004582020.1 | 2869584 | 2869668 | - | - |
| bmo-mir-263b | MI0004977 | 11 | NW_004581687.1 | 1534394 | 1534482 | + | - |
| bmo-mir-263a | MI0004978 | 55247 | NW_004582020.1 | 2312197 | 2312291 | - | High |
| bmo-mir-275 | MI0004979 | 1813 | NW_004582013.1 | 1926698 | 1926783 | + | - |
| bmo-mir-276 | MI0004980 | 18057 | None | None | High | ||
| bmo-mir-277 | MI0004981 | 538 | NW_004581681.1 | 3821386 | 3821507 | - | High |
| bmo-mir-279a | MI0004982 | 119 | NW_004581691.1 | 11805 | 11889 | + | - |
| bmo-mir-283 | MI0004984 | 479 | NW_004581701.1 | 692153 | 692235 | - | High |
| bmo-mir-31 | MI0005377 | 3150 | NW_004581778.1 | 423738 | 423858 | + | High |
| bmo-mir-71 | MI0005378 | 64 | NW_004582015.1 | 7707526 | 7707644 | - | High |
| bmo-mir-2a-1 | MI0008338 | 390 | NW_004582015.1 | 7692561 | 7692650 | - | High |
| bmo-mir-2a-2 | MI0008339 | 291 | NW_004582015.1 | 7692153 | 7692232 | - | High |
| bmo-mir-2b | MI0008340 | 72 | NW_004582015.1 | 7692030 | 7692105 | - | High |
| bmo-mir-13a | MI0008341 | 25 | NW_004582015.1 | 7692416 | 7692494 | - | - |
| bmo-mir-13b | MI0008342 | 88 | NW_004582015.1 | 7692288 | 7692367 | - | High |
| bmo-mir-79 | MI0008343 | 743 | NW_004581774.1 | 31444 | 31543 | + | - |
| bmo-mir-87 | MI0008344 | 34 | NW_004581697.1 | 299073 | 299173 | + | - |
| bmo-mir-133 | MI0008345 | 4 | NW_004582020.1 | 5611904 | 5612004 | - | - |
| bmo-mir-184 | MI0008346 | 303 | NW_004582034.1 | 4769236 | 4769319 | - | - |
| bmo-mir-210 | MI0008347 | 2 | NW_004582008.1 | 4476417 | 4476508 | + | - |
| bmo-mir-281 | MI0008348 | 6348 | NW_004582034.1 | 1683515 | 1683591 | + | High |
| bmo-mir-317 | MI0008349 | 1925 | NW_004581681.1 | 3841495 | 3841586 | - | High |
| bmo-mir-932 | MI0010003 | 1 | NW_004582012.1 | 7613424 | 7613512 | + | - |
| bmo-mir-9b | MI0010004 | 2 | NW_004581774.1 | 31448 | 31537 | - | - |
| bmo-mir-278 | MI0010006 | 2327 | NW_004582026.1 | 5082537 | 5082623 | + | High |
| bmo-mir-252 | MI0010621 | 55 | NW_004581747.1 | 1258448 | 1258532 | - | - |
| bmo-mir-965 | MI0010623 | 639 | NW_004582012.1 | 8411478 | 8411581 | - | High |
| bmo-mir-2733a-1 | MI0012182 | 1 | NW_004581684.1 | 347677 | 347760 | - | - |
| bmo-mir-9c | MI0012193 | 3998 | NW_004581774.1 | 28981 | 29088 | + | High |
| bmo-mir-306a | MI0012201 | 55075 | NW_004581774.1 | 30978 | 31085 | + | High |
| bmo-mir-989a | MI0012205 | 59 | NW_004582008.1 | 14748776 | 14748866 | - | - |
| bmo-mir-100 | MI0012291 | 16771 | NW_004582019.1 | 3376172 | 3376313 | - | - |
| bmo-mir-33 | MI0012293 | 192 | NW_004582008.1 | 9552124 | 9552203 | + | High |
| bmo-mir-279d | MI0012297 | 110 | NW_004582019.1 | 739120 | 739195 | + | - |
| bmo-mir-279b | MI0012298 | 5250 | NW_004581681.1 | 2936576 | 2936652 | + | High |
| bmo-mir-279c | MI0012299 | 11385 | NW_004581681.1 | 2936836 | 2936915 | + | - |
| bmo-mir-2733e-2 | MI0012303 | 4 | NW_004581684.1 | 342566 | 342664 | - | - |
| bmo-mir-2733c | MI0012306 | 9 | NW_004581684.1 | 353724 | 353805 | - | - |
| bmo-mir-9d | MI0012307 | 2 | NW_004581684.1 | 354559 | 354643 | - | - |
| bmo-mir-306b | MI0012989 | 7 | NW_004581774.1 | 30994 | 31069 | - | - |
| bmo-mir-1b | MI0012994 | 27 | NW_004582020.1 | 5628058 | 5628136 | + | - |
| bmo-mir-1000 | MI0013533 | 0 | NW_004581752.1 | 862500 | 862581 | + | - |
| bmo-mir-279e | MI0014278 | None | NW_004582009.1 | 6127664 | 6127769 | - | - |
| bmo-mir-2733j | MI0014412 | 1 | None | None | - | ||
| bmo-mir-2733b-2 | MI0014413 | 1 | NW_004581684.1 | 347220 | 347348 | - | - |
| bmo-mir-2733i | MI0014452 | 1 | NW_004581684.1 | 344891 | 344998 | - | - |
| bmo-mir-2733a-3 | MI0014453 | 1 | NW_004581684.1 | 346598 | 346745 | - | - |
| bmo-mir-989b | MI0014484 | None | NW_004582026.1 | 2823459 | 2823579 | - | - |