Stem-loop bmo-mir-281

Accession

MI0008348

Description

Bombyx mori bmo-mir-281 precursor miRNA

Literature search

6 open access papers mention bmo-mir-281
(21 sentences)

Sequence

35119 reads, 6305 reads per million, 3 experiments

ucuguuaaugAAGAGAGCUAUCCGUCGACAGUauugcugauaaacACUGUCAUGGAGUUGCUCUCUUuaugaacgga
((((((.(((((((((((..(((((.((((((.((.......)).)))))))))))...))))))))))).))))))

Structure

      a           -UA     C      a  gc 
ucuguu augAAGAGAGC   UCCGU GACAGU uu  u
|||||| |||||||||||   ||||| |||||| ||  g
aggcaa uauUUCUCUCG   AGGUA CUGUCA aa  a
      g           UUG     -      c  au 

Annotation confidence High

Genome context

NW_004582034.1: 1683515-1683591 [+]

Mature bmo-miR-281-5p

• Accession: MIMAT0007904
• Description: Bombyx mori bmo-miR-281-5p mature miRNA
• Sequence: 11 - AAGAGAGCUAUCCGUCGACAGU - 32
• Evidence: experimental ; Northern [1], RT-PCR [2], Illumina [3]

Mature bmo-miR-281-3p

• Accession: MIMAT0007905
• Description: Bombyx mori bmo-miR-281-3p mature miRNA
• Sequence: 46 - ACUGUCAUGGAGUUGCUCUCUU - 67
• Evidence: experimental ; Northern [1], RT-PCR [2], Illumina [3]

References

1. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


2. PubMed ID: 18977439
   Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
   "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
   "Insect Biochem Mol Biol (2008) 38:1066-1071


3. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148