Stem-loop bmo-mir-965

Accession

MI0010623

Description

Bombyx mori bmo-mir-965 precursor miRNA

Literature search

5 open access papers mention bmo-mir-965
(8 sentences)

Sequence

3621 reads, 611 reads per million, 3 experiments

auauaaauggcugcauagcuaaaCGGGAGAAGCUAUAGCGCUAUAUGucaauauuaaaaucaUAAGCGUAUAGCUUUUCCCCUUgguuaugcaugcauauucuc
......(((..(((((((((((..(((((((((((((.((((.((((.............))))))))))))))))))))).)))))))))))..)))......

Structure

auauaa   gc           aC             G    A    ucaau 
      aug  ugcauagcuaa  GGGAGAAGCUAUA CGCU UAUG     a
      |||  |||||||||||  ||||||||||||| |||| ||||     u
      uac  acguauuggUU  CCCUUUUCGAUAU GCGA AUac     u
cucuua   gu           -C             -    -    uaaaa 

Annotation confidence Medium

Genome context

NW_004582012.1: 8411478-8411581 [-]

Mature bmo-miR-965-5p

• Accession: MIMAT0015295
• Description: Bombyx mori bmo-miR-965-5p mature miRNA
• Sequence: 24 - CGGGAGAAGCUAUAGCGCUAUAUG - 47
• Evidence: experimental ; Illumina [2]

Mature bmo-miR-965-3p

• Accession: MIMAT0010126
• Description: Bombyx mori bmo-miR-965-3p mature miRNA
• Sequence: 63 - UAAGCGUAUAGCUUUUCCCCUU - 84
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148