Stem-loop bmo-mir-2b

Accession

MI0008340

Description

Bombyx mori bmo-mir-2b precursor miRNA

Literature search

11 open access papers mention bmo-mir-2b
(43 sentences)

Sequence

356 reads, 69 reads per million, 3 experiments

cgcuagaacUCGACAAGGUGGUUGUGACAUGggggcucaggaucaUAUCACAGCCAGCUUUGUUGAGUucucggcu
.((((((((((((((((((((((((((.((((..........)))).))))))))).)))))))))))))).))).

Structure

c   -              -         C    gggc 
 gcu agaacUCGACAAGG UGGUUGUGA AUGg    u
 ||| |||||||||||||| ||||||||| ||||     
 cgg ucuUGAGUUGUUUC ACCGACACU Uacu    c
u   c              G         A    agga 

Annotation confidence Medium

Genome context

NW_004582015.1: 7692030-7692105 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from bmo-mir-2b

Mature bmo-miR-2b-5p

• Accession: MIMAT0015273
• Description: Bombyx mori bmo-miR-2b-5p mature miRNA
• Sequence: 10 - UCGACAAGGUGGUUGUGACAUG - 31
• Evidence: experimental ; Illumina [2]

Mature bmo-miR-2b-3p

• Accession: MIMAT0007895
• Description: Bombyx mori bmo-miR-2b-3p mature miRNA
• Sequence: 46 - UAUCACAGCCAGCUUUGUUGAGU - 68
• Evidence: experimental ; Northern [1], Illumina [2]

References

1. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


2. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148