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Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing |
|
|---|---|
| PubMed ID | 23437348 |
| Authors | Zhang R, Marshall D, Bryan GJ, Hornyik C |
| Journal | PLoS One |
| Volume | 8 |
| Pages | e57233 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| stu-MIR6024 | MI0020241 | None | JH137968.1 | 737039 | 737156 | - | - |
| stu-MIR482b | MI0020245 | None | JH138014.1 | 538021 | 538142 | - | - |
| stu-MIR482a | MI0020246 | None | JH137851.1 | 1458152 | 1458255 | + | - |
| stu-MIR482d | MI0020248 | None | JH138014.1 | 531315 | 531424 | - | - |
| stu-MIR482e | MI0020249 | None | JH138014.1 | 542533 | 542643 | - | - |
| stu-MIR6026 | MI0020256 | None | JH137959.1 | 711491 | 711732 | + | - |
| stu-MIR7979 | MI0025755 | None | JH138453.1 | 184064 | 184161 | - | - |
| stu-MIR7980a | MI0025756 | None | JH138453.1 | 161895 | 161952 | - | - |
| stu-MIR7981 | MI0025757 | None | JH138445.1 | 138080 | 138287 | + | - |
| stu-MIR7982a | MI0025758 | None | JH137960.1 | 751242 | 751329 | + | - |
| stu-MIR7982b | MI0025759 | None | JH138159.1 | 422179 | 422266 | + | - |
| stu-MIR7983 | MI0025760 | None | JH138561.1 | 39265 | 39324 | - | - |
| stu-MIR7984a | MI0025761 | None | JH137928.1 | 1282894 | 1283092 | + | - |
| stu-MIR7984b | MI0025762 | None | JH138511.1 | 123046 | 123240 | - | - |
| stu-MIR7985 | MI0025763 | None | JH137811.1 | 469164 | 469215 | - | - |
| stu-MIR5303c | MI0025764 | None | JH137893.1 | 976272 | 976326 | + | - |
| stu-MIR5303a | MI0025765 | None | JH137896.1 | 1679671 | 1679724 | + | - |
| stu-MIR5303b | MI0025766 | None | JH137953.1 | 1285195 | 1285249 | - | - |
| stu-MIR5303d | MI0025767 | None | JH138193.1 | 69372 | 69426 | - | - |
| stu-MIR7986 | MI0025768 | None | JH138594.1 | 39437 | 39523 | + | - |
| stu-MIR7987 | MI0025769 | None | JH137812.1 | 107558 | 107614 | + | - |
| stu-MIR7984c | MI0025770 | None | JH138777.1 | 6817 | 7020 | - | - |
| stu-MIR7988 | MI0025771 | None | JH137816.1 | 765387 | 765450 | - | - |
| stu-MIR7989 | MI0025772 | None | JH137816.1 | 1118598 | 1118729 | + | - |
| stu-MIR7990a | MI0025773 | None | JH137794.1 | 4455048 | 4455148 | - | - |
| stu-MIR7991a | MI0025774 | None | JH137823.1 | 2261693 | 2261739 | + | - |
| stu-MIR7991b | MI0025775 | None | JH137844.1 | 1130881 | 1130927 | - | - |
| stu-MIR7991c | MI0025776 | None | JH138314.1 | 174744 | 174790 | + | - |
| stu-MIR7992 | MI0025777 | None | JH137824.1 | 720823 | 720962 | - | - |
| stu-MIR1886a | MI0025778 | None | JH137794.1 | 3845179 | 3845248 | + | - |
| stu-MIR1886b | MI0025779 | None | JH137828.1 | 1641030 | 1641099 | - | - |
| stu-MIR1886c | MI0025780 | None | JH137832.1 | 2129719 | 2129788 | + | - |
| stu-MIR1886d | MI0025781 | None | JH137840.1 | 429619 | 429688 | + | - |
| stu-MIR1886e | MI0025782 | None | JH137845.1 | 1089849 | 1089918 | + | - |
| stu-MIR1886f | MI0025783 | None | JH137876.1 | 1123353 | 1123422 | + | - |
| stu-MIR7993a | MI0025784 | None | JH137845.1 | 1002915 | 1003056 | + | - |
| stu-MIR7993b | MI0025785 | None | JH137990.1 | 439579 | 439712 | + | - |
| stu-MIR7993c | MI0025786 | None | JH138039.1 | 449268 | 449409 | + | - |
| stu-MIR7993d | MI0025787 | None | JH138039.1 | 571859 | 572000 | + | - |
| stu-MIR7994a | MI0025788 | None | JH137855.1 | 1997957 | 1998044 | - | - |
| stu-MIR7994b | MI0025789 | None | JH137885.1 | 442742 | 442886 | - | - |
| stu-MIR7995 | MI0025790 | None | JH137859.1 | 1318266 | 1318404 | + | - |
| stu-MIR7996a | MI0025791 | None | JH137859.1 | 227652 | 227841 | + | - |
| stu-MIR7996b | MI0025792 | None | JH137822.1 | 2556836 | 2557025 | + | - |
| stu-MIR7996c | MI0025793 | None | JH138313.1 | 61352 | 61541 | + | - |
| stu-MIR7997a | MI0025794 | None | JH137794.1 | 1313823 | 1313940 | + | - |
| stu-MIR7997b | MI0025795 | None | JH137797.1 | 3479983 | 3480100 | + | - |
| stu-MIR7997c | MI0025796 | None | JH137863.1 | 266441 | 266560 | + | - |
| stu-MIR7998 | MI0025797 | None | JH137796.1 | 1579223 | 1579346 | + | - |
| stu-MIR7999 | MI0025798 | None | JH137869.1 | 1426335 | 1426384 | + | - |
| stu-MIR8000 | MI0025799 | None | JH137869.1 | 279923 | 279979 | + | - |
| stu-MIR8001a | MI0025800 | None | JH137873.1 | 1872569 | 1872639 | + | - |
| stu-MIR8002 | MI0025801 | None | JH137874.1 | 704336 | 704431 | - | - |
| stu-MIR8003 | MI0025802 | None | JH137796.1 | 3921717 | 3921778 | + | - |
| stu-MIR8004 | MI0025803 | None | JH137887.1 | 469247 | 469309 | - | - |
| stu-MIR8005a | MI0025804 | None | JH137905.1 | 1478170 | 1478296 | + | - |
| stu-MIR8005b | MI0025805 | None | JH137959.1 | 260188 | 260305 | - | - |
| stu-MIR8005c | MI0025806 | None | JH138203.1 | 492626 | 492823 | + | - |
| stu-MIR8006 | MI0025807 | None | JH137916.1 | 947302 | 947516 | + | - |
| stu-MIR8007a | MI0025808 | None | JH137932.1 | 818593 | 818818 | + | - |
| stu-MIR1886g | MI0025809 | None | JH137938.1 | 702521 | 702570 | + | - |
| stu-MIR8008a | MI0025810 | None | JH137941.1 | 131720 | 131774 | + | - |
| stu-MIR8009 | MI0025811 | None | JH137951.1 | 965 | 1020 | + | - |
| stu-MIR5303e | MI0025812 | None | JH137948.1 | 1126959 | 1127013 | - | - |
| stu-MIR5303f | MI0025813 | None | JH138336.1 | 156713 | 156762 | - | - |
| stu-MIR1886h | MI0025814 | None | JH137948.1 | 1076572 | 1076623 | - | - |
| stu-MIR8010 | MI0025815 | None | JH137951.1 | 1337093 | 1337296 | + | - |
| stu-MIR8011a | MI0025816 | None | JH137959.1 | 709134 | 709230 | + | - |
| stu-MIR8012 | MI0025817 | None | JH137959.1 | 1216643 | 1216755 | + | - |
| stu-MIR8013 | MI0025818 | None | JH137968.1 | 710277 | 710350 | + | - |
| stu-MIR8014 | MI0025819 | None | JH137984.1 | 833988 | 834059 | - | - |
| stu-MIR8007b | MI0025820 | None | JH138003.1 | 403573 | 403790 | + | - |
| stu-MIR8015 | MI0025821 | None | JH138004.1 | 952993 | 953065 | + | - |
| stu-MIR8016 | MI0025822 | None | JH137804.1 | 952075 | 952144 | + | - |
| stu-MIR8017 | MI0025823 | None | JH138019.1 | 849054 | 849116 | + | - |
| stu-MIR8018 | MI0025824 | None | JH137804.1 | 156172 | 156226 | + | - |
| stu-MIR8019 | MI0025825 | None | JH138030.1 | 659898 | 659985 | - | - |
| stu-MIR8001b | MI0025826 | None | JH138045.1 | 943713 | 943779 | - | - |
| stu-MIR7990b | MI0025827 | None | JH138071.1 | 26038 | 26117 | + | - |
| stu-MIR8020 | MI0025828 | None | JH138083.1 | 711624 | 711710 | - | - |
| stu-MIR8021 | MI0025829 | None | JH138088.1 | 345340 | 345558 | - | - |
| stu-MIR8022 | MI0025830 | None | JH138098.1 | 592297 | 592372 | + | - |
| stu-MIR8023 | MI0025831 | None | JH138103.1 | 311626 | 311757 | + | - |
| stu-MIR8024a | MI0025832 | None | JH137805.1 | 1984844 | 1984960 | - | - |
| stu-MIR8024b | MI0025833 | None | JH138287.1 | 266682 | 266767 | + | - |
| stu-MIR1886i | MI0025834 | None | JH138128.1 | 40008 | 40061 | - | - |
| stu-MIR8025 | MI0025835 | None | JH138169.1 | 171074 | 171211 | + | - |
| stu-MIR8026 | MI0025836 | None | JH138175.1 | 376696 | 376773 | + | - |
| stu-MIR7984d | MI0025837 | None | JH138192.1 | 420389 | 420606 | + | - |
| stu-MIR8027 | MI0025838 | None | JH138222.1 | 392297 | 392347 | - | - |
| stu-MIR7980b | MI0025839 | None | JH138233.1 | 14259 | 14378 | - | - |
| stu-MIR8008b | MI0025840 | None | JH137809.1 | 770257 | 770311 | - | - |
| stu-MIR8028 | MI0025841 | None | JH138358.1 | 235499 | 235641 | - | - |
| stu-MIR8029 | MI0025842 | None | JH138414.1 | 61689 | 61793 | + | - |
| stu-MIR8030 | MI0025843 | None | JH138037.1 | 540458 | 540514 | + | - |
| stu-MIR8031 | MI0025844 | None | JH138272.1 | 223719 | 223776 | - | - |
| stu-MIR8032a | MI0025845 | None | JH137817.1 | 1226288 | 1226335 | + | - |
| stu-MIR8032b | MI0025846 | None | JH137885.1 | 1380802 | 1380849 | + | - |
| stu-MIR8032c | MI0025847 | None | JH138081.1 | 745494 | 745541 | + | - |
| stu-MIR8032d | MI0025848 | None | JH138124.1 | 258871 | 258918 | - | - |
| stu-MIR8032e | MI0025849 | None | JH137857.1 | 1728495 | 1728542 | - | - |
| stu-MIR8032f | MI0025850 | None | JH138256.1 | 121389 | 121436 | - | - |
| stu-MIR8032g | MI0025851 | None | JH138341.1 | 167916 | 167963 | - | - |
| stu-MIR8033 | MI0025852 | None | JH137849.1 | 1423416 | 1423485 | + | - |
| stu-MIR8034 | MI0025853 | None | JH137935.1 | 1256821 | 1256992 | - | - |
| stu-MIR8035 | MI0025854 | None | JH137999.1 | 94077 | 94186 | - | - |
| stu-MIR8036 | MI0025855 | None | JH138005.1 | 141241 | 141332 | - | - |
| stu-MIR8037 | MI0025856 | None | JH138026.1 | 8716 | 8789 | - | - |
| stu-MIR8038a | MI0025857 | None | JH138051.1 | 882831 | 882929 | + | - |
| stu-MIR8038b | MI0025858 | None | JH138279.1 | 46700 | 46798 | + | - |
| stu-MIR8011b | MI0025859 | None | JH138056.1 | 287593 | 287671 | + | - |
| stu-MIR8039 | MI0025860 | None | JH138751.1 | 1849 | 1926 | - | - |
| stu-MIR319 | MI0025861 | None | JH137816.1 | 1868464 | 1868640 | + | - |
| stu-MIR8040 | MI0025862 | None | JH137872.1 | 1628935 | 1629013 | + | - |
| stu-MIR8041a | MI0025863 | None | JH137872.1 | 167537 | 167607 | - | - |
| stu-MIR8041b | MI0025864 | None | JH137924.1 | 1395800 | 1395870 | - | - |
| stu-MIR8042 | MI0025865 | None | JH137879.1 | 1228667 | 1228769 | - | - |
| stu-MIR8043 | MI0025866 | None | JH137885.1 | 556154 | 556278 | + | - |
| stu-MIR8044 | MI0025867 | None | JH137893.1 | 423235 | 423319 | + | - |
| stu-MIR8045 | MI0025868 | None | JH137904.1 | 609522 | 609610 | + | - |
| stu-MIR7122 | MI0025869 | None | JH137909.1 | 1135926 | 1136002 | - | - |
| stu-MIR8046 | MI0025870 | None | JH137928.1 | 1284990 | 1285072 | + | - |
| stu-MIR8047 | MI0025871 | None | JH137928.1 | 986410 | 986496 | - | - |
| stu-MIR6149 | MI0025872 | None | JH137942.1 | 10809 | 10875 | - | - |
| stu-MIR399a | MI0025873 | None | JH137943.1 | 1321860 | 1321923 | + | - |
| stu-MIR399b | MI0025874 | None | JH137943.1 | 1330373 | 1330436 | + | - |
| stu-MIR399c | MI0025875 | None | JH137943.1 | 1345907 | 1345970 | + | - |
| stu-MIR399d | MI0025876 | None | JH137943.1 | 1350997 | 1351060 | + | - |
| stu-MIR399e | MI0025877 | None | JH137943.1 | 1357658 | 1357721 | + | - |
| stu-MIR399f | MI0025878 | None | JH137943.1 | 1348794 | 1348857 | - | - |
| stu-MIR399g | MI0025879 | None | JH137943.1 | 1312547 | 1312614 | - | - |
| stu-MIR399h | MI0025880 | None | JH138221.1 | 24637 | 24703 | + | - |
| stu-MIR8048 | MI0025881 | None | JH138031.1 | 663027 | 663095 | - | - |
| stu-MIR164 | MI0025882 | None | JH138033.1 | 603264 | 603340 | + | - |
| stu-MIR5304 | MI0025883 | None | JH138090.1 | 77646 | 77725 | + | - |
| stu-MIR8049 | MI0025884 | None | JH138095.1 | 329885 | 329963 | + | - |
| stu-MIR8050 | MI0025885 | None | JH137810.1 | 2620941 | 2621043 | - | - |
| stu-MIR1919 | MI0025886 | None | JH138382.1 | 101946 | 102041 | - | - |
| stu-MIR8051 | MI0025887 | None | None | None | - | ||
| stu-MIR5303j | MI0025926 | None | JH137863.1 | 893617 | 893724 | + | - |
| stu-MIR5303g | MI0025927 | None | JH137902.1 | 155453 | 155546 | + | - |
| stu-MIR5303h | MI0025928 | None | JH138058.1 | 671120 | 671228 | - | - |
| stu-MIR5303i | MI0025929 | None | JH138109.1 | 42382 | 42489 | + | - |
| stu-MIR3627 | MI0025930 | None | JH137794.1 | 2388118 | 2388200 | - | - |
| stu-MIR171b | MI0025931 | None | JH138432.1 | 116543 | 116626 | + | - |
| stu-MIR166a | MI0025932 | None | JH137800.1 | 3902789 | 3902895 | + | - |
| stu-MIR166b | MI0025933 | None | JH137916.1 | 535831 | 535921 | - | - |
| stu-MIR166c | MI0025934 | None | JH137934.1 | 464574 | 464656 | + | - |
| stu-MIR166d | MI0025935 | None | JH138443.1 | 48077 | 48153 | - | - |
| stu-MIR171a | MI0025936 | None | JH137810.1 | 1766224 | 1766312 | + | - |
| stu-MIR171c | MI0025937 | None | JH138511.1 | 106309 | 106367 | - | - |
| stu-MIR399i | MI0025938 | None | JH138739.1 | 10330 | 10423 | + | - |
| stu-MIR395a | MI0025939 | None | JH137931.1 | 851903 | 851974 | - | - |
| stu-MIR395b | MI0025940 | None | JH137931.1 | 852079 | 852150 | - | - |
| stu-MIR395c | MI0025941 | None | JH138105.1 | 628404 | 628475 | + | - |
| stu-MIR395d | MI0025942 | None | JH138105.1 | 629597 | 629668 | + | - |
| stu-MIR395e | MI0025943 | None | JH138865.1 | 2236 | 2304 | + | - |
| stu-MIR395f | MI0025944 | None | JH138865.1 | 14956 | 15024 | + | - |
| stu-MIR395g | MI0025945 | None | JH138865.1 | 20451 | 20525 | + | - |
| stu-MIR395h | MI0025946 | None | JH139101.1 | 2286 | 2357 | + | - |
| stu-MIR395i | MI0025947 | None | JH139101.1 | 2451 | 2522 | + | - |
| stu-MIR395j | MI0025948 | None | JH138918.1 | 6984 | 7055 | - | - |
| stu-MIR827 | MI0025949 | None | JH137826.1 | 454124 | 454210 | - | - |
| stu-MIR391 | MI0025950 | None | JH137834.1 | 1355044 | 1355131 | - | - |
| stu-MIR319b | MI0025951 | None | JH137816.1 | 2292041 | 2292213 | - | - |
| stu-MIR319a | MI0025952 | None | JH137840.1 | 1381096 | 1381267 | + | - |
| stu-MIR162a | MI0025953 | None | JH137851.1 | 1030741 | 1030821 | + | - |
| stu-MIR162b | MI0025954 | None | JH137971.1 | 147916 | 148007 | + | - |
| stu-MIR160a | MI0025955 | None | JH137863.1 | 504871 | 504955 | + | - |
| stu-MIR160b | MI0025956 | None | JH138023.1 | 757259 | 757340 | - | - |
| stu-MIR172b | MI0025957 | None | JH137863.1 | 779979 | 780069 | - | - |
| stu-MIR172c | MI0025958 | None | JH137874.1 | 229149 | 229293 | - | - |
| stu-MIR172a | MI0025959 | None | JH137880.1 | 29806 | 29909 | - | - |
| stu-MIR172d | MI0025960 | None | JH137992.1 | 672078 | 672169 | + | - |
| stu-MIR172e | MI0025961 | None | JH138154.1 | 115358 | 115481 | - | - |
| stu-MIR156a | MI0025962 | None | JH137878.1 | 427242 | 427328 | - | - |
| stu-MIR156b | MI0025963 | None | JH137878.1 | 425005 | 425091 | - | - |
| stu-MIR156c | MI0025964 | None | JH138045.1 | 664569 | 664646 | - | - |
| stu-MIR156d | MI0025965 | None | JH138336.1 | 107387 | 107479 | + | - |
| stu-MIR171d | MI0025966 | None | JH137887.1 | 1016160 | 1016241 | - | - |
| stu-MIR167c | MI0025967 | None | JH137901.1 | 1246472 | 1246560 | + | - |
| stu-MIR167b | MI0025968 | None | JH137901.1 | 1256041 | 1256114 | + | - |
| stu-MIR167a | MI0025969 | None | JH137937.1 | 863406 | 863487 | - | - |
| stu-MIR167d | MI0025970 | None | JH138225.1 | 216951 | 217025 | - | - |
| stu-MIR479 | MI0025971 | None | JH137915.1 | 152885 | 152955 | + | - |
| stu-MIR399j | MI0025972 | None | JH137943.1 | 1373207 | 1373281 | - | - |
| stu-MIR399k | MI0025973 | None | JH137943.1 | 1326953 | 1327016 | - | - |
| stu-MIR399l | MI0025974 | None | JH137943.1 | 1337176 | 1337239 | - | - |
| stu-MIR399m | MI0025975 | None | JH137943.1 | 1343553 | 1343616 | - | - |
| stu-MIR399n | MI0025976 | None | JH137943.1 | 1332990 | 1333053 | - | - |
| stu-MIR399o | MI0025977 | None | JH137943.1 | 1355425 | 1355488 | - | - |
| stu-MIR393 | MI0025978 | None | JH137943.1 | 172773 | 172848 | + | - |
| stu-MIR477a | MI0025979 | None | JH137800.1 | 3232100 | 3232167 | + | - |
| stu-MIR477b | MI0025980 | None | JH137800.1 | 3232231 | 3232301 | + | - |
| stu-MIR530 | MI0025981 | None | JH137965.1 | 575880 | 575960 | + | - |
| stu-MIR398a | MI0025982 | None | JH138006.1 | 144958 | 145048 | + | - |
| stu-MIR398b | MI0025983 | None | JH138056.1 | 472688 | 472768 | - | - |
| stu-MIR396 | MI0025984 | None | JH138058.1 | 516359 | 516463 | + | - |
| stu-MIR408a | MI0025985 | None | JH138061.1 | 680411 | 680483 | + | - |
| stu-MIR408b | MI0025986 | None | JH138061.1 | 638573 | 638643 | + | - |
| stu-MIR397 | MI0025987 | None | JH138102.1 | 591745 | 591825 | + | - |
| stu-MIR390 | MI0025988 | None | JH138232.1 | 264152 | 264221 | - | - |
| stu-MIR171e | MI0025989 | None | JH138336.1 | 218276 | 218353 | - | - |
| stu-MIR156e | MI0025990 | None | JH137825.1 | 159113 | 159199 | + | - |
| stu-MIR156f | MI0025991 | None | JH137904.1 | 1311175 | 1311287 | + | - |
| stu-MIR156g | MI0025992 | None | JH137923.1 | 449543 | 449629 | + | - |
| stu-MIR156h | MI0025993 | None | JH137923.1 | 518360 | 518447 | + | - |
| stu-MIR156i | MI0025994 | None | JH137923.1 | 518632 | 518719 | + | - |
| stu-MIR156j | MI0025995 | None | JH137923.1 | 550610 | 550701 | + | - |
| stu-MIR156k | MI0025996 | None | JH137923.1 | 347706 | 347793 | - | - |
| stu-MIR169a | MI0025997 | None | JH137832.1 | 2197227 | 2197346 | + | - |
| stu-MIR169b | MI0025998 | None | JH137832.1 | 2204840 | 2204951 | - | - |
| stu-MIR169c | MI0025999 | None | JH138085.1 | 295136 | 295220 | - | - |
| stu-MIR169d | MI0026000 | None | JH138085.1 | 294901 | 294991 | - | - |
| stu-MIR169e | MI0026001 | None | JH138085.1 | 297829 | 297901 | + | - |
| stu-MIR169f | MI0026002 | None | JH138318.1 | 169894 | 169997 | - | - |
| stu-MIR169g | MI0026003 | None | JH138318.1 | 159255 | 159347 | - | - |
| stu-MIR169h | MI0026004 | None | JH138318.1 | 155222 | 155302 | - | - |
| stu-MIR384 | MI0026005 | None | JH137895.1 | 1400643 | 1400702 | + | - |
| stu-MIR482c | MI0020244 | None | JH138014.1 | 530969 | 531103 | - | - |